Hong Chang, Li Liu, Qingping Zhang, Gangyao Xu, Jianpeng Wang, Ping Chen, Cheng Li, Xianni Guo, Zhengjun Yang, Feng Zhang
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LC-MS raw data files were converted into mzXML format and then processed by the XCMS, CAMERA, and metaX toolbox implemented with R software. The online Kyoto Encyclopedia of Genes and Genomes (KEGG) database was used to annotate the metabolites by matching the exact molecular mass data of samples with those from the database.</p><p><strong>Results: </strong>A total of 807 ion features were identified for KBD and OA, including 577 positive (240 for upregulated and 337 for downregulated) and 230 negative (107 for upregulated and 123 for downregulated) ions. After annotation, LC-MS identified significant expressions of ten upregulated and eight downregulated second-level metabolites, and 183 upregulated and 162 downregulated first-level metabolites between KBD and OA. We identified differentially expressed second-level metabolites that are highly associated with cartilage damage, including dimethyl sulfoxide, uric acid, and betaine. These metabolites exist in sulphur metabolism, purine metabolism, and glycine, serine, and threonine metabolism.</p><p><strong>Conclusion: </strong>This comprehensive comparative analysis of metabolism in OA and KBD cartilage provides new evidence of differences in the pathogenetic mechanisms underlying cartilage damage in these two conditions.</p>","PeriodicalId":9074,"journal":{"name":"Bone & Joint Research","volume":"13 7","pages":"362-371"},"PeriodicalIF":4.7000,"publicationDate":"2024-07-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11251783/pdf/","citationCount":"0","resultStr":"{\"title\":\"A comparative metabolomic analysis reveals the metabolic variations among cartilage of Kashin-Beck disease and osteoarthritis.\",\"authors\":\"Hong Chang, Li Liu, Qingping Zhang, Gangyao Xu, Jianpeng Wang, Ping Chen, Cheng Li, Xianni Guo, Zhengjun Yang, Feng Zhang\",\"doi\":\"10.1302/2046-3758.137.BJR-2023-0403.R1\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Aims: </strong>The metabolic variations between the cartilage of osteoarthritis (OA) and Kashin-Beck disease (KBD) remain largely unknown. 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引用次数: 0
摘要
目的:骨关节炎(OA)和卡申-贝克病(KBD)软骨之间的代谢差异在很大程度上仍不为人所知。我们的研究旨在通过对 KBD 和 OA 软骨中存在的代谢特征进行比较分析来解决这一问题:方法:在进行全膝关节置换手术时收集 KBD 患者(10 人)和 OA 患者(10 人)的软骨样本。采用液相色谱-质谱联用技术(LC-MS)的非靶向代谢组学方法研究了KBD和OA的代谢组学特征。LC-MS 原始数据文件被转换成 mzXML 格式,然后用 R 软件实现的 XCMS、CAMERA 和 metaX 工具箱进行处理。在线京都基因和基因组百科全书(KEGG)数据库被用来注释代谢物,方法是将样品的精确分子质量数据与数据库中的数据进行匹配:结果:共鉴定出 KBD 和 OA 的 807 个离子特征,包括 577 个正离子(240 个上调离子和 337 个下调离子)和 230 个负离子(107 个上调离子和 123 个下调离子)。经过注释后,LC-MS 在 KBD 和 OA 之间发现了 10 个上调和 8 个下调的二级代谢物以及 183 个上调和 162 个下调的一级代谢物的显著表达。我们发现了与软骨损伤高度相关的二级代谢物的差异表达,包括二甲基亚砜、尿酸和甜菜碱。这些代谢物存在于硫代谢、嘌呤代谢以及甘氨酸、丝氨酸和苏氨酸代谢中:对OA和KBD软骨代谢的全面比较分析为这两种病症中软骨损伤的致病机制差异提供了新的证据。
A comparative metabolomic analysis reveals the metabolic variations among cartilage of Kashin-Beck disease and osteoarthritis.
Aims: The metabolic variations between the cartilage of osteoarthritis (OA) and Kashin-Beck disease (KBD) remain largely unknown. Our study aimed to address this by conducting a comparative analysis of the metabolic profiles present in the cartilage of KBD and OA.
Methods: Cartilage samples from patients with KBD (n = 10) and patients with OA (n = 10) were collected during total knee arthroplasty surgery. An untargeted metabolomics approach using liquid chromatography coupled with mass spectrometry (LC-MS) was conducted to investigate the metabolomics profiles of KBD and OA. LC-MS raw data files were converted into mzXML format and then processed by the XCMS, CAMERA, and metaX toolbox implemented with R software. The online Kyoto Encyclopedia of Genes and Genomes (KEGG) database was used to annotate the metabolites by matching the exact molecular mass data of samples with those from the database.
Results: A total of 807 ion features were identified for KBD and OA, including 577 positive (240 for upregulated and 337 for downregulated) and 230 negative (107 for upregulated and 123 for downregulated) ions. After annotation, LC-MS identified significant expressions of ten upregulated and eight downregulated second-level metabolites, and 183 upregulated and 162 downregulated first-level metabolites between KBD and OA. We identified differentially expressed second-level metabolites that are highly associated with cartilage damage, including dimethyl sulfoxide, uric acid, and betaine. These metabolites exist in sulphur metabolism, purine metabolism, and glycine, serine, and threonine metabolism.
Conclusion: This comprehensive comparative analysis of metabolism in OA and KBD cartilage provides new evidence of differences in the pathogenetic mechanisms underlying cartilage damage in these two conditions.