DBScope 作为一种多功能计算工具箱,用于脑深部刺激传感数据的可视化和分析

IF 6.7 1区 医学 Q1 NEUROSCIENCES
Andreia M. Oliveira, Eduardo Carvalho, Beatriz Barros, Carolina Soares, Manuel J. Ferreira-Pinto, Rui Vaz, Paulo Aguiar
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引用次数: 0

摘要

用于脑深部刺激(DBS)的不同神经刺激器已具备在刺激过程中长期感知局部场电位的能力。这些宝贵的新数据有可能加深我们对与疾病相关的大脑活动模式、其时间演变及其对疗法反应的调节的了解。它还为揭示新的电生理生物标记提供了机会,并最终使适应性刺激疗法更接近临床实践。遗憾的是,在如何对这些新型 DBS 神经刺激器的传感数据进行可视化、分析和充分挖掘其潜力方面,可供选择的方案仍然非常有限。为了满足这一需求,我们开发了一个名为 DBScope 的免费开源工具箱,该工具箱可从神经刺激设备导入数据,并可通过两种方式进行操作:通过用户界面和以函数库的形式进行编程。通过这种方式,临床医生可以在临床诊疗过程中使用它(例如,直观地检查当前或之前的诊疗数据),研究人员也可以在他们的研究管道中使用它(例如,用于预处理、特征提取和生物标记搜索)。总之,DBScope 工具箱旨在促进临床决策过程和临床相关生物标记物的鉴定。该工具箱已在临床和研究环境中使用,可在 GitHub 上免费下载(也有完整的文档)。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

DBScope as a versatile computational toolbox for the visualization and analysis of sensing data from deep brain stimulation

DBScope as a versatile computational toolbox for the visualization and analysis of sensing data from deep brain stimulation

Different neurostimulators for deep brain stimulation (DBS) come already with the ability to chronically sense local field potentials during stimulation. This invaluable new data has the potential to increase our understanding of disease-related brain activity patterns, their temporal evolution, and their modulation in response to therapies. It also gives the opportunity to unveil new electrophysiological biomarkers and ultimately bring adaptive stimulation therapies closer to clinical practice. Unfortunately, there are still very limited options on how to visualize, analyze, and exploit the full potential of the sensing data from these new DBS neurostimulators. To answer this need, we developed a free open-source toolbox, named DBScope, that imports data from neurostimulation devices and can be operated in two ways: via user interface and programmatically, as a library of functions. In this way, it can be used by both clinicians during clinical sessions (for instance, to visually inspect data from the current or previous in-clinic visits), and by researchers in their research pipelines (e.g., for pre-processing, feature extraction and biomarker search). All in all, the DBScope toolbox is set to facilitate the clinical decision-making process and the identification of clinically relevant biomarkers. The toolbox is already being used in clinical and research environments, and it is freely available to download at GitHub (where it is also fully documented).

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来源期刊
NPJ Parkinson's Disease
NPJ Parkinson's Disease Medicine-Neurology (clinical)
CiteScore
9.80
自引率
5.70%
发文量
156
审稿时长
11 weeks
期刊介绍: npj Parkinson's Disease is a comprehensive open access journal that covers a wide range of research areas related to Parkinson's disease. It publishes original studies in basic science, translational research, and clinical investigations. The journal is dedicated to advancing our understanding of Parkinson's disease by exploring various aspects such as anatomy, etiology, genetics, cellular and molecular physiology, neurophysiology, epidemiology, and therapeutic development. By providing free and immediate access to the scientific and Parkinson's disease community, npj Parkinson's Disease promotes collaboration and knowledge sharing among researchers and healthcare professionals.
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