加利福尼亚州美洲黑熊的基因组组装。

IF 3 2区 生物学 Q2 EVOLUTIONARY BIOLOGY
Megan A Supple, Merly Escalona, Jillian Adkins, Michael R Buchalski, Nicolas Alexandre, Ruta M Sahasrabudhe, Oanh Nguyen, Samuel Sacco, Colin Fairbairn, Eric Beraut, William Seligmann, Richard E Green, Erin Meredith, Beth Shapiro
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引用次数: 0

摘要

美洲黑熊(Ursus americanus)是北美洲分布广泛且具有重要生态意义的物种。在加利福尼亚,黑熊在各种生态系统中发挥着重要作用,也是休闲狩猎的重要物种。虽然研究表明加州的黑熊种群目前是健康的,但持续的监测对于维持健康的种群至关重要,而基因组分析则是重要的监测工具。在此,我们报告了一个来自加利福尼亚州的美洲狮样本的高质量、近染色体水平的基因组组装结果。该主装配的总长度为 2.5 Gb,包含在 317 个支架中,等位基因 N50 为 58.9 Mb,支架 N50 为 67.6 Mb,BUSCO 完整性得分为 96%。这个来自加利福尼亚样本的美洲黑熊基因组组装将为加利福尼亚黑熊种群的目标管理提供重要资源,其目标是在黑熊的娱乐价值和维持种群活力之间实现适当的平衡。该基因组的高质量也将使其成为黑熊种群间和黑熊物种间进行基因组比较分析的宝贵资源。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A genome assembly of the American black bear, Ursus americanus, from California.

The American black bear, Ursus americanus, is a widespread and ecologically important species in North America. In California, the black bear plays an important role in a variety of ecosystems and serves as an important species for recreational hunting. While research suggests that the populations in California are currently healthy, continued monitoring is critical, with genomic analyses providing an important surveillance tool. Here we report a high-quality, near chromosome-level genome assembly from a U. americanus sample from California. The primary assembly has a total length of 2.5 Gb contained in 316 scaffolds, a contig N50 of 58.9 Mb, a scaffold N50 of 67.6 Mb, and a BUSCO completeness score of 96%. This U. americanus genome assembly will provide an important resource for the targeted management of black bear populations in California, with the goal of achieving an appropriate balance between the recreational value of black bears and the maintenance of viable populations. The high quality of this genome assembly will also make it a valuable resource for comparative genomic analyses among black bear populations and among bear species.

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来源期刊
Journal of Heredity
Journal of Heredity 生物-遗传学
CiteScore
5.20
自引率
6.50%
发文量
63
审稿时长
6-12 weeks
期刊介绍: Over the last 100 years, the Journal of Heredity has established and maintained a tradition of scholarly excellence in the publication of genetics research. Virtually every major figure in the field has contributed to the journal. Established in 1903, Journal of Heredity covers organismal genetics across a wide range of disciplines and taxa. Articles include such rapidly advancing fields as conservation genetics of endangered species, population structure and phylogeography, molecular evolution and speciation, molecular genetics of disease resistance in plants and animals, genetic biodiversity and relevant computer programs.
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