Ve Van Le, So-Ra Ko, Loan Thi Thanh Nguyen, Jin-Cheol Kim, Yuna Shin, Kyunghyun Kim, Chi-Yong Ahn
{"title":"在蓝藻藻华期从淡水中分离出的一种产素细菌--Undibacterium cyanobacteriorum sp.","authors":"Ve Van Le, So-Ra Ko, Loan Thi Thanh Nguyen, Jin-Cheol Kim, Yuna Shin, Kyunghyun Kim, Chi-Yong Ahn","doi":"10.1007/s10482-024-01992-8","DOIUrl":null,"url":null,"abstract":"<div><p>A novel Gram-negative, white-pigmented, and auxin-producing strain, 20NA77.5<sup>T</sup>, was isolated from fresh water during cyanobacterial bloom period. Pairwise comparison of the 16S rRNA gene sequences showed that strain 20NA77.5<sup>T</sup> belonged to the genus <i>Undibacterium</i> and exhibited the highest sequence similarity to the type strains of <i>Undibacterium danionis</i> (98.00%), <i>Undibacterium baiyunense</i> (97.93%), <i>Undibacterium macrobrachii</i> (97.92%), and <i>Undibacterium fentianense</i> (97.71%)<i>.</i> The average nucleotide identity (ANI) and digital DNA–DNA hybridization (dDDH) values between strain 20NA77.5<sup>T</sup> and its related type strains were below 79.93 and 23.80%, respectively. The predominant fatty acids (> 10% of the total fatty acids) were C<sub>16:0</sub> and summed feature 3 (C<sub>16:1</sub><i>ω</i>7<i>c</i> and/or C<sub>16:1</sub><i>ω</i>6<i>c</i>). The genomic DNA G + C content of strain 20NA77.5<sup>T</sup> was found to be 48.61%. Based on the phylogenetic distinctness, chemotaxonomic features, and phenotypic features, strain 20NA77.5<sup>T</sup> is considered to represent a novel species of the genus <i>Undibacterium,</i> for which the name <i>Undibacterium cyanobacteriorum</i> sp. nov is proposed. The type strain is 20NA77.5<sup>T</sup> (= KCTC 8005<sup>T</sup> = LMG 33136<sup>T</sup>).</p></div>","PeriodicalId":50746,"journal":{"name":"Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology","volume":"117 1","pages":""},"PeriodicalIF":1.8000,"publicationDate":"2024-07-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Undibacterium cyanobacteriorum sp. nov., an auxin-producing bacterium isolated from fresh water during cyanobacterial bloom period\",\"authors\":\"Ve Van Le, So-Ra Ko, Loan Thi Thanh Nguyen, Jin-Cheol Kim, Yuna Shin, Kyunghyun Kim, Chi-Yong Ahn\",\"doi\":\"10.1007/s10482-024-01992-8\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>A novel Gram-negative, white-pigmented, and auxin-producing strain, 20NA77.5<sup>T</sup>, was isolated from fresh water during cyanobacterial bloom period. Pairwise comparison of the 16S rRNA gene sequences showed that strain 20NA77.5<sup>T</sup> belonged to the genus <i>Undibacterium</i> and exhibited the highest sequence similarity to the type strains of <i>Undibacterium danionis</i> (98.00%), <i>Undibacterium baiyunense</i> (97.93%), <i>Undibacterium macrobrachii</i> (97.92%), and <i>Undibacterium fentianense</i> (97.71%)<i>.</i> The average nucleotide identity (ANI) and digital DNA–DNA hybridization (dDDH) values between strain 20NA77.5<sup>T</sup> and its related type strains were below 79.93 and 23.80%, respectively. The predominant fatty acids (> 10% of the total fatty acids) were C<sub>16:0</sub> and summed feature 3 (C<sub>16:1</sub><i>ω</i>7<i>c</i> and/or C<sub>16:1</sub><i>ω</i>6<i>c</i>). The genomic DNA G + C content of strain 20NA77.5<sup>T</sup> was found to be 48.61%. Based on the phylogenetic distinctness, chemotaxonomic features, and phenotypic features, strain 20NA77.5<sup>T</sup> is considered to represent a novel species of the genus <i>Undibacterium,</i> for which the name <i>Undibacterium cyanobacteriorum</i> sp. nov is proposed. The type strain is 20NA77.5<sup>T</sup> (= KCTC 8005<sup>T</sup> = LMG 33136<sup>T</sup>).</p></div>\",\"PeriodicalId\":50746,\"journal\":{\"name\":\"Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology\",\"volume\":\"117 1\",\"pages\":\"\"},\"PeriodicalIF\":1.8000,\"publicationDate\":\"2024-07-10\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s10482-024-01992-8\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology","FirstCategoryId":"99","ListUrlMain":"https://link.springer.com/article/10.1007/s10482-024-01992-8","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"MICROBIOLOGY","Score":null,"Total":0}
Undibacterium cyanobacteriorum sp. nov., an auxin-producing bacterium isolated from fresh water during cyanobacterial bloom period
A novel Gram-negative, white-pigmented, and auxin-producing strain, 20NA77.5T, was isolated from fresh water during cyanobacterial bloom period. Pairwise comparison of the 16S rRNA gene sequences showed that strain 20NA77.5T belonged to the genus Undibacterium and exhibited the highest sequence similarity to the type strains of Undibacterium danionis (98.00%), Undibacterium baiyunense (97.93%), Undibacterium macrobrachii (97.92%), and Undibacterium fentianense (97.71%). The average nucleotide identity (ANI) and digital DNA–DNA hybridization (dDDH) values between strain 20NA77.5T and its related type strains were below 79.93 and 23.80%, respectively. The predominant fatty acids (> 10% of the total fatty acids) were C16:0 and summed feature 3 (C16:1ω7c and/or C16:1ω6c). The genomic DNA G + C content of strain 20NA77.5T was found to be 48.61%. Based on the phylogenetic distinctness, chemotaxonomic features, and phenotypic features, strain 20NA77.5T is considered to represent a novel species of the genus Undibacterium, for which the name Undibacterium cyanobacteriorum sp. nov is proposed. The type strain is 20NA77.5T (= KCTC 8005T = LMG 33136T).
期刊介绍:
Antonie van Leeuwenhoek publishes papers on fundamental and applied aspects of microbiology. Topics of particular interest include: taxonomy, structure & development; biochemistry & molecular biology; physiology & metabolic studies; genetics; ecological studies; especially molecular ecology; marine microbiology; medical microbiology; molecular biological aspects of microbial pathogenesis and bioinformatics.