NOMAD 微型应用程序:一套来自自证电子结构代码的内核,实现高性能计算中的协同设计。

Open research Europe Pub Date : 2025-04-10 eCollection Date: 2024-01-01 DOI:10.12688/openreseurope.16920.2
Isidre Mas Magre, Rogeli Grima Torres, José María Cela Espín, José Julio Gutierrez Moreno
{"title":"NOMAD 微型应用程序:一套来自自证电子结构代码的内核,实现高性能计算中的协同设计。","authors":"Isidre Mas Magre, Rogeli Grima Torres, José María Cela Espín, José Julio Gutierrez Moreno","doi":"10.12688/openreseurope.16920.2","DOIUrl":null,"url":null,"abstract":"<p><p>This article introduces a suite of mini-applications (mini-apps) designed to optimise computational kernels in <i>ab initio</i> electronic structure codes. The suite is developed from flagship applications participating in the NOMAD Center of Excellence, such as the ELPA eigensolver library and the <i>GW</i> implementations of the exciting, Abinit, and FHI-aims codes. The mini-apps were identified by targeting functions that significantly contribute to the total execution time in the parent applications. This strategic selection allows for concentrated optimisation efforts. The suite is designed for easy deployment on various High-Performance Computing (HPC) systems, supported by an integrated CMake build system for straightforward compilation and execution. The aim is to harness the capabilities of emerging (post)exascale systems, which necessitate concurrent hardware and software development - a concept known as co-design. The mini-app suite serves as a tool for profiling and benchmarking, providing insights that can guide both software optimisation and hardware design. Ultimately, these developments will enable more accurate and efficient simulations of novel materials, leveraging the full potential of exascale computing in material science research.</p>","PeriodicalId":74359,"journal":{"name":"Open research Europe","volume":"4 ","pages":"35"},"PeriodicalIF":0.0000,"publicationDate":"2025-04-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11224708/pdf/","citationCount":"0","resultStr":"{\"title\":\"The NOMAD mini-apps: A suite of kernels from ab initio electronic structure codes enabling co-design in high-performance computing.\",\"authors\":\"Isidre Mas Magre, Rogeli Grima Torres, José María Cela Espín, José Julio Gutierrez Moreno\",\"doi\":\"10.12688/openreseurope.16920.2\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>This article introduces a suite of mini-applications (mini-apps) designed to optimise computational kernels in <i>ab initio</i> electronic structure codes. The suite is developed from flagship applications participating in the NOMAD Center of Excellence, such as the ELPA eigensolver library and the <i>GW</i> implementations of the exciting, Abinit, and FHI-aims codes. The mini-apps were identified by targeting functions that significantly contribute to the total execution time in the parent applications. This strategic selection allows for concentrated optimisation efforts. The suite is designed for easy deployment on various High-Performance Computing (HPC) systems, supported by an integrated CMake build system for straightforward compilation and execution. The aim is to harness the capabilities of emerging (post)exascale systems, which necessitate concurrent hardware and software development - a concept known as co-design. The mini-app suite serves as a tool for profiling and benchmarking, providing insights that can guide both software optimisation and hardware design. Ultimately, these developments will enable more accurate and efficient simulations of novel materials, leveraging the full potential of exascale computing in material science research.</p>\",\"PeriodicalId\":74359,\"journal\":{\"name\":\"Open research Europe\",\"volume\":\"4 \",\"pages\":\"35\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2025-04-10\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11224708/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Open research Europe\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.12688/openreseurope.16920.2\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Open research Europe","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.12688/openreseurope.16920.2","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/1/1 0:00:00","PubModel":"eCollection","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

本文介绍了一套迷你应用程序(mini-apps),旨在优化自洽电子结构代码中的计算内核。该套件是在参与 NOMAD 高级研究中心的旗舰应用程序(如 ELPA eigensolver 库和 exciting、Abinit 和 FHI-aims 代码的 GW 实现)基础上开发的。迷你应用程序是针对对父应用程序总执行时间有重大影响的功能而确定的。这种策略性选择可以集中优化工作。该套件设计用于在各种高性能计算(HPC)系统上轻松部署,由集成的 CMake 编译系统支持,可直接编译和执行。其目的是利用新兴(后)超大规模系统的能力,这些系统需要同时进行硬件和软件开发,这就是所谓的协同设计概念。迷你应用套件可作为剖析和基准测试工具,提供可指导软件优化和硬件设计的见解。最终,这些开发成果将使新型材料的模拟更加精确和高效,充分发挥超大规模计算在材料科学研究中的潜力。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
The NOMAD mini-apps: A suite of kernels from ab initio electronic structure codes enabling co-design in high-performance computing.

This article introduces a suite of mini-applications (mini-apps) designed to optimise computational kernels in ab initio electronic structure codes. The suite is developed from flagship applications participating in the NOMAD Center of Excellence, such as the ELPA eigensolver library and the GW implementations of the exciting, Abinit, and FHI-aims codes. The mini-apps were identified by targeting functions that significantly contribute to the total execution time in the parent applications. This strategic selection allows for concentrated optimisation efforts. The suite is designed for easy deployment on various High-Performance Computing (HPC) systems, supported by an integrated CMake build system for straightforward compilation and execution. The aim is to harness the capabilities of emerging (post)exascale systems, which necessitate concurrent hardware and software development - a concept known as co-design. The mini-app suite serves as a tool for profiling and benchmarking, providing insights that can guide both software optimisation and hardware design. Ultimately, these developments will enable more accurate and efficient simulations of novel materials, leveraging the full potential of exascale computing in material science research.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
1.50
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信