针对椭圆界面问题的二阶梯度逼近紧凑耦合界面方法

IF 4.6 Q2 MATERIALS SCIENCE, BIOMATERIALS
Ray Zirui Zhang, Li-Tien Cheng
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引用次数: 0

摘要

我们提出了紧凑耦合界面法,这是一种有限差分法,不仅能获得解值的二阶精确近似值,还能获得解值梯度的二阶精确近似值,适用于具有界面跃迁条件的椭圆复杂界面问题。这种带有界面跃迁条件的椭圆界面边界值问题是热传导、流体流动、材料科学和蛋白质对接等领域众多应用的关键部分。一个典型的例子涉及生物分子形状的构建,在这种情况下,椭圆界面问题是线性化泊松-波尔兹曼方程的形式,涉及整个界面的不连续介电常数,这些介电常数控制着静电贡献。此外,当涉及界面动力学时,界面的法向速度可能由解的法向导数组成,我们的方法可以将其近似为二阶,从而获得精确的界面动力学。我们的方法可以在任意空间维度上进行表述,结合了针对此类椭圆界面问题的备受推崇的耦合界面法和 Smereka 的二阶精确离散三角函数的元素。其结果是一种变体和混合体,具有比耦合界面法更紧凑的模版,而且在涉及几何模型问题和复杂生物分子表面的数值实验中,具有误差曲线更稳健的优点。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

A Compact Coupling Interface Method with Second-Order Gradient Approximation for Elliptic Interface Problems

A Compact Coupling Interface Method with Second-Order Gradient Approximation for Elliptic Interface Problems

We propose the Compact Coupling Interface Method, a finite difference method capable of obtaining second-order accurate approximations of not only solution values but their gradients, for elliptic complex interface problems with interfacial jump conditions. Such elliptic interface boundary value problems with interfacial jump conditions are a critical part of numerous applications in fields such as heat conduction, fluid flow, materials science, and protein docking, to name a few. A typical example involves the construction of biomolecular shapes, where such elliptic interface problems are in the form of linearized Poisson–Boltzmann equations, involving discontinuous dielectric constants across the interface, that govern electrostatic contributions. Additionally, when interface dynamics are involved, the normal velocity of the interface might be comprised of the normal derivatives of solution, which can be approximated to second-order by our method, resulting in accurate interface dynamics. Our method, which can be formulated in arbitrary spatial dimensions, combines elements of the highly-regarded Coupling Interface Method, for such elliptic interface problems, and Smereka’s second-order accurate discrete delta function. The result is a variation and hybrid with a more compact stencil than that found in the Coupling Interface Method, and with advantages, borne out in numerical experiments involving both geometric model problems and complex biomolecular surfaces, in more robust error profiles.

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来源期刊
ACS Applied Bio Materials
ACS Applied Bio Materials Chemistry-Chemistry (all)
CiteScore
9.40
自引率
2.10%
发文量
464
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