{"title":"从青藏高原藏羚羊(Pantholops hodgsonii)土壤和粪便中分离出的Nocardioides bizhenqiangii sp.nov.和Nocardioides renjunii sp.nov.。","authors":"Huimin Zhou, Linglin Cao, Caixin Yang, Sihui Zhang, Ji Pu, Jing Yang, Shuo Ning, Xiaorui Liu, Chunmei Liu, Liyun Liu, Jianguo Xu","doi":"10.1099/ijsem.0.006437","DOIUrl":null,"url":null,"abstract":"<p><p>Two novel strain pairs (HM61<sup>T</sup>/HM23 and S-34<sup>T</sup>/S-58) were isolated from soil and the faeces of Tibetan antelope (<i>Pantholops hodgsonii</i>) collected at the Qinghai-Tibet Plateau of PR China. All four new isolates were aerobic, non-motile, Gram-stain-positive, catalase-positive, oxidase-negative, and short rod-shaped bacteria. The results of phylogenetic analysis based on the full-length 16S rRNA genes and 283 core genomic genes indicated that the four strains were separated into two independent branches belonging to the genus <i>Nocardioides</i>. Strains HM61<sup>T</sup> and HM23 were most closely related to <i>Nocardioides pelophilus</i> THG T63<sup>T</sup> (98.58 and 98.65 % 16S rRNA gene sequence similarity). Strains S-34<sup>T</sup> and S-58 were most closely related to <i>Nocardioides okcheonensis</i> MMS20-HV4-12<sup>T</sup> (98.89 and 98.89 % 16S rRNA gene sequence similarity). The G+C contents of the genomic DNA of strains HM61<sup>T</sup> and S-34<sup>T</sup> were 70.6 and 72.5 mol%, respectively. Strains HM61<sup>T</sup>, S-34<sup>T</sup> and the type strains of closely related species in the analysis had average nucleotide identity values of 75.4-90.5 % as well as digital DNA-DNA hybridization values between 20.1 and 40.8 %, which clearly indicated that the four isolates represent two novel species within the genus <i>Nocardioides</i>. The chemotaxonomic characteristics of strains HM61<sup>T</sup> and S-34<sup>T</sup> were consistent with the genus <i>Nocardioides</i>. The major fatty acids of all four strains were <i>iso</i>-C<sub>16 : 0</sub>, C<sub>17 : 1</sub> <i> ω</i>8<i>c</i> or C<sub>18 : 1</sub> <i> ω</i>9<i>c</i>. For strains HM61<sup>T</sup> and S-34<sup>T</sup>, MK-8(H<sub>4</sub>) was the predominant respiratory quinone, ll-2,6-diaminopimelic acid was the diagnostic diamino acid in the cell-wall peptidoglycan, and the polar lipids profiles were composed of diphosphatidylglycerol and phosphatidylglycerol. Based on phylogenetic, phenotypic, and chemotaxonomic data, we propose that strains HM61<sup>T</sup> and S-34<sup>T</sup> represent two novel species of the genus <i>Nocardioides</i>, respectively, with the names <i>Nocardioides bizhenqiangii</i> sp. nov. and <i>Nocardioides renjunii</i> sp. nov. The type strains are HM61<sup>T</sup> (=GDMCC 4.343<sup>T</sup>=JCM 36399<sup>T</sup>) and S-34<sup>T</sup> (=CGMCC 4.7664<sup>T</sup>=JCM 33792<sup>T</sup>).</p>","PeriodicalId":2,"journal":{"name":"ACS Applied Bio Materials","volume":null,"pages":null},"PeriodicalIF":4.6000,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"<i>Nocardioides bizhenqiangii</i> sp. nov. and <i>Nocardioides renjunii</i> sp. nov., isolated from soil and faeces of Tibetan antelope (<i>Pantholops hodgsonii</i>) on the Qinghai-Tibet Plateau.\",\"authors\":\"Huimin Zhou, Linglin Cao, Caixin Yang, Sihui Zhang, Ji Pu, Jing Yang, Shuo Ning, Xiaorui Liu, Chunmei Liu, Liyun Liu, Jianguo Xu\",\"doi\":\"10.1099/ijsem.0.006437\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Two novel strain pairs (HM61<sup>T</sup>/HM23 and S-34<sup>T</sup>/S-58) were isolated from soil and the faeces of Tibetan antelope (<i>Pantholops hodgsonii</i>) collected at the Qinghai-Tibet Plateau of PR China. All four new isolates were aerobic, non-motile, Gram-stain-positive, catalase-positive, oxidase-negative, and short rod-shaped bacteria. The results of phylogenetic analysis based on the full-length 16S rRNA genes and 283 core genomic genes indicated that the four strains were separated into two independent branches belonging to the genus <i>Nocardioides</i>. Strains HM61<sup>T</sup> and HM23 were most closely related to <i>Nocardioides pelophilus</i> THG T63<sup>T</sup> (98.58 and 98.65 % 16S rRNA gene sequence similarity). Strains S-34<sup>T</sup> and S-58 were most closely related to <i>Nocardioides okcheonensis</i> MMS20-HV4-12<sup>T</sup> (98.89 and 98.89 % 16S rRNA gene sequence similarity). The G+C contents of the genomic DNA of strains HM61<sup>T</sup> and S-34<sup>T</sup> were 70.6 and 72.5 mol%, respectively. Strains HM61<sup>T</sup>, S-34<sup>T</sup> and the type strains of closely related species in the analysis had average nucleotide identity values of 75.4-90.5 % as well as digital DNA-DNA hybridization values between 20.1 and 40.8 %, which clearly indicated that the four isolates represent two novel species within the genus <i>Nocardioides</i>. The chemotaxonomic characteristics of strains HM61<sup>T</sup> and S-34<sup>T</sup> were consistent with the genus <i>Nocardioides</i>. The major fatty acids of all four strains were <i>iso</i>-C<sub>16 : 0</sub>, C<sub>17 : 1</sub> <i> ω</i>8<i>c</i> or C<sub>18 : 1</sub> <i> ω</i>9<i>c</i>. For strains HM61<sup>T</sup> and S-34<sup>T</sup>, MK-8(H<sub>4</sub>) was the predominant respiratory quinone, ll-2,6-diaminopimelic acid was the diagnostic diamino acid in the cell-wall peptidoglycan, and the polar lipids profiles were composed of diphosphatidylglycerol and phosphatidylglycerol. Based on phylogenetic, phenotypic, and chemotaxonomic data, we propose that strains HM61<sup>T</sup> and S-34<sup>T</sup> represent two novel species of the genus <i>Nocardioides</i>, respectively, with the names <i>Nocardioides bizhenqiangii</i> sp. nov. and <i>Nocardioides renjunii</i> sp. nov. The type strains are HM61<sup>T</sup> (=GDMCC 4.343<sup>T</sup>=JCM 36399<sup>T</sup>) and S-34<sup>T</sup> (=CGMCC 4.7664<sup>T</sup>=JCM 33792<sup>T</sup>).</p>\",\"PeriodicalId\":2,\"journal\":{\"name\":\"ACS Applied Bio Materials\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":4.6000,\"publicationDate\":\"2024-07-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"ACS Applied Bio Materials\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1099/ijsem.0.006437\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"MATERIALS SCIENCE, BIOMATERIALS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Applied Bio Materials","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1099/ijsem.0.006437","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MATERIALS SCIENCE, BIOMATERIALS","Score":null,"Total":0}
Nocardioides bizhenqiangii sp. nov. and Nocardioides renjunii sp. nov., isolated from soil and faeces of Tibetan antelope (Pantholops hodgsonii) on the Qinghai-Tibet Plateau.
Two novel strain pairs (HM61T/HM23 and S-34T/S-58) were isolated from soil and the faeces of Tibetan antelope (Pantholops hodgsonii) collected at the Qinghai-Tibet Plateau of PR China. All four new isolates were aerobic, non-motile, Gram-stain-positive, catalase-positive, oxidase-negative, and short rod-shaped bacteria. The results of phylogenetic analysis based on the full-length 16S rRNA genes and 283 core genomic genes indicated that the four strains were separated into two independent branches belonging to the genus Nocardioides. Strains HM61T and HM23 were most closely related to Nocardioides pelophilus THG T63T (98.58 and 98.65 % 16S rRNA gene sequence similarity). Strains S-34T and S-58 were most closely related to Nocardioides okcheonensis MMS20-HV4-12T (98.89 and 98.89 % 16S rRNA gene sequence similarity). The G+C contents of the genomic DNA of strains HM61T and S-34T were 70.6 and 72.5 mol%, respectively. Strains HM61T, S-34T and the type strains of closely related species in the analysis had average nucleotide identity values of 75.4-90.5 % as well as digital DNA-DNA hybridization values between 20.1 and 40.8 %, which clearly indicated that the four isolates represent two novel species within the genus Nocardioides. The chemotaxonomic characteristics of strains HM61T and S-34T were consistent with the genus Nocardioides. The major fatty acids of all four strains were iso-C16 : 0, C17 : 1 ω8c or C18 : 1 ω9c. For strains HM61T and S-34T, MK-8(H4) was the predominant respiratory quinone, ll-2,6-diaminopimelic acid was the diagnostic diamino acid in the cell-wall peptidoglycan, and the polar lipids profiles were composed of diphosphatidylglycerol and phosphatidylglycerol. Based on phylogenetic, phenotypic, and chemotaxonomic data, we propose that strains HM61T and S-34T represent two novel species of the genus Nocardioides, respectively, with the names Nocardioides bizhenqiangii sp. nov. and Nocardioides renjunii sp. nov. The type strains are HM61T (=GDMCC 4.343T=JCM 36399T) and S-34T (=CGMCC 4.7664T=JCM 33792T).