从青藏高原藏羚羊(Pantholops hodgsonii)土壤和粪便中分离出的Nocardioides bizhenqiangii sp.nov.和Nocardioides renjunii sp.nov.。

IF 4.6 Q2 MATERIALS SCIENCE, BIOMATERIALS
Huimin Zhou, Linglin Cao, Caixin Yang, Sihui Zhang, Ji Pu, Jing Yang, Shuo Ning, Xiaorui Liu, Chunmei Liu, Liyun Liu, Jianguo Xu
{"title":"从青藏高原藏羚羊(Pantholops hodgsonii)土壤和粪便中分离出的Nocardioides bizhenqiangii sp.nov.和Nocardioides renjunii sp.nov.。","authors":"Huimin Zhou, Linglin Cao, Caixin Yang, Sihui Zhang, Ji Pu, Jing Yang, Shuo Ning, Xiaorui Liu, Chunmei Liu, Liyun Liu, Jianguo Xu","doi":"10.1099/ijsem.0.006437","DOIUrl":null,"url":null,"abstract":"<p><p>Two novel strain pairs (HM61<sup>T</sup>/HM23 and S-34<sup>T</sup>/S-58) were isolated from soil and the faeces of Tibetan antelope (<i>Pantholops hodgsonii</i>) collected at the Qinghai-Tibet Plateau of PR China. All four new isolates were aerobic, non-motile, Gram-stain-positive, catalase-positive, oxidase-negative, and short rod-shaped bacteria. The results of phylogenetic analysis based on the full-length 16S rRNA genes and 283 core genomic genes indicated that the four strains were separated into two independent branches belonging to the genus <i>Nocardioides</i>. Strains HM61<sup>T</sup> and HM23 were most closely related to <i>Nocardioides pelophilus</i> THG T63<sup>T</sup> (98.58 and 98.65 % 16S rRNA gene sequence similarity). Strains S-34<sup>T</sup> and S-58 were most closely related to <i>Nocardioides okcheonensis</i> MMS20-HV4-12<sup>T</sup> (98.89 and 98.89 % 16S rRNA gene sequence similarity). The G+C contents of the genomic DNA of strains HM61<sup>T</sup> and S-34<sup>T</sup> were 70.6 and 72.5 mol%, respectively. Strains HM61<sup>T</sup>, S-34<sup>T</sup> and the type strains of closely related species in the analysis had average nucleotide identity values of 75.4-90.5 % as well as digital DNA-DNA hybridization values between 20.1 and 40.8 %, which clearly indicated that the four isolates represent two novel species within the genus <i>Nocardioides</i>. The chemotaxonomic characteristics of strains HM61<sup>T</sup> and S-34<sup>T</sup> were consistent with the genus <i>Nocardioides</i>. The major fatty acids of all four strains were <i>iso</i>-C<sub>16 : 0</sub>, C<sub>17 : 1</sub> <i> ω</i>8<i>c</i> or C<sub>18 : 1</sub> <i> ω</i>9<i>c</i>. For strains HM61<sup>T</sup> and S-34<sup>T</sup>, MK-8(H<sub>4</sub>) was the predominant respiratory quinone, ll-2,6-diaminopimelic acid was the diagnostic diamino acid in the cell-wall peptidoglycan, and the polar lipids profiles were composed of diphosphatidylglycerol and phosphatidylglycerol. Based on phylogenetic, phenotypic, and chemotaxonomic data, we propose that strains HM61<sup>T</sup> and S-34<sup>T</sup> represent two novel species of the genus <i>Nocardioides</i>, respectively, with the names <i>Nocardioides bizhenqiangii</i> sp. nov. and <i>Nocardioides renjunii</i> sp. nov. The type strains are HM61<sup>T</sup> (=GDMCC 4.343<sup>T</sup>=JCM 36399<sup>T</sup>) and S-34<sup>T</sup> (=CGMCC 4.7664<sup>T</sup>=JCM 33792<sup>T</sup>).</p>","PeriodicalId":2,"journal":{"name":"ACS Applied Bio Materials","volume":null,"pages":null},"PeriodicalIF":4.6000,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"<i>Nocardioides bizhenqiangii</i> sp. nov. and <i>Nocardioides renjunii</i> sp. nov., isolated from soil and faeces of Tibetan antelope (<i>Pantholops hodgsonii</i>) on the Qinghai-Tibet Plateau.\",\"authors\":\"Huimin Zhou, Linglin Cao, Caixin Yang, Sihui Zhang, Ji Pu, Jing Yang, Shuo Ning, Xiaorui Liu, Chunmei Liu, Liyun Liu, Jianguo Xu\",\"doi\":\"10.1099/ijsem.0.006437\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Two novel strain pairs (HM61<sup>T</sup>/HM23 and S-34<sup>T</sup>/S-58) were isolated from soil and the faeces of Tibetan antelope (<i>Pantholops hodgsonii</i>) collected at the Qinghai-Tibet Plateau of PR China. All four new isolates were aerobic, non-motile, Gram-stain-positive, catalase-positive, oxidase-negative, and short rod-shaped bacteria. The results of phylogenetic analysis based on the full-length 16S rRNA genes and 283 core genomic genes indicated that the four strains were separated into two independent branches belonging to the genus <i>Nocardioides</i>. Strains HM61<sup>T</sup> and HM23 were most closely related to <i>Nocardioides pelophilus</i> THG T63<sup>T</sup> (98.58 and 98.65 % 16S rRNA gene sequence similarity). Strains S-34<sup>T</sup> and S-58 were most closely related to <i>Nocardioides okcheonensis</i> MMS20-HV4-12<sup>T</sup> (98.89 and 98.89 % 16S rRNA gene sequence similarity). The G+C contents of the genomic DNA of strains HM61<sup>T</sup> and S-34<sup>T</sup> were 70.6 and 72.5 mol%, respectively. Strains HM61<sup>T</sup>, S-34<sup>T</sup> and the type strains of closely related species in the analysis had average nucleotide identity values of 75.4-90.5 % as well as digital DNA-DNA hybridization values between 20.1 and 40.8 %, which clearly indicated that the four isolates represent two novel species within the genus <i>Nocardioides</i>. The chemotaxonomic characteristics of strains HM61<sup>T</sup> and S-34<sup>T</sup> were consistent with the genus <i>Nocardioides</i>. The major fatty acids of all four strains were <i>iso</i>-C<sub>16 : 0</sub>, C<sub>17 : 1</sub> <i> ω</i>8<i>c</i> or C<sub>18 : 1</sub> <i> ω</i>9<i>c</i>. For strains HM61<sup>T</sup> and S-34<sup>T</sup>, MK-8(H<sub>4</sub>) was the predominant respiratory quinone, ll-2,6-diaminopimelic acid was the diagnostic diamino acid in the cell-wall peptidoglycan, and the polar lipids profiles were composed of diphosphatidylglycerol and phosphatidylglycerol. Based on phylogenetic, phenotypic, and chemotaxonomic data, we propose that strains HM61<sup>T</sup> and S-34<sup>T</sup> represent two novel species of the genus <i>Nocardioides</i>, respectively, with the names <i>Nocardioides bizhenqiangii</i> sp. nov. and <i>Nocardioides renjunii</i> sp. nov. The type strains are HM61<sup>T</sup> (=GDMCC 4.343<sup>T</sup>=JCM 36399<sup>T</sup>) and S-34<sup>T</sup> (=CGMCC 4.7664<sup>T</sup>=JCM 33792<sup>T</sup>).</p>\",\"PeriodicalId\":2,\"journal\":{\"name\":\"ACS Applied Bio Materials\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":4.6000,\"publicationDate\":\"2024-07-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"ACS Applied Bio Materials\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1099/ijsem.0.006437\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"MATERIALS SCIENCE, BIOMATERIALS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Applied Bio Materials","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1099/ijsem.0.006437","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MATERIALS SCIENCE, BIOMATERIALS","Score":null,"Total":0}
引用次数: 0

摘要

从中国青藏高原采集的土壤和藏羚羊(Pantholops hodgsonii)粪便中分离出两对新菌株(HM61T/HM23 和 S-34T/S-58)。新分离的四种细菌均为需氧、无运动性、革兰氏染色阳性、催化酶阳性、氧化酶阴性的短杆状细菌。基于全长 16S rRNA 基因和 283 个核心基因组的系统进化分析结果表明,这四株菌株被分为属于 Nocardioides 属的两个独立分支。菌株 HM61T 和 HM23 与 Nocardioides pelophilus THG T63T 的亲缘关系最密切(16S rRNA 基因序列相似度分别为 98.58 % 和 98.65 %)。菌株 S-34T 和 S-58 与 Nocardioides okcheonensis MMS20-HV4-12T 的亲缘关系最密切(16S rRNA 基因序列相似度分别为 98.89 % 和 98.89 %)。菌株 HM61T 和 S-34T 基因组 DNA 的 G+C 含量分别为 70.6 和 72.5 mol%。HM61T、S-34T菌株与近缘种的模式菌株的平均核苷酸同一性为75.4%-90.5%,数字DNA-DNA杂交值在20.1%-40.8%之间,这清楚地表明这四个分离株代表了Nocardioides属中的两个新种。菌株 HM61T 和 S-34T 的化学分类学特征与 Nocardioides 属一致。四株菌株的主要脂肪酸均为异-C16 :0, C17 :1 ω8c 或 C18 :1 ω9c。对于菌株 HM61T 和 S-34T,MK-8(H4)是主要的呼吸醌,ll-2,6-diaminopimelic 酸是细胞壁肽聚糖中的诊断性二胺酸,极性脂类由二磷脂酰甘油和磷脂酰甘油组成。根据系统发育、表型和化学分类学数据,我们认为菌株 HM61T 和 S-34T 分别代表 Nocardioides 属的两个新种,命名为 Nocardioides bizhenqiangii sp.模式菌株为 HM61T(=GDMCC 4.343T=JCM 36399T)和 S-34T(=CGMCC 4.7664T=JCM 33792T)。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Nocardioides bizhenqiangii sp. nov. and Nocardioides renjunii sp. nov., isolated from soil and faeces of Tibetan antelope (Pantholops hodgsonii) on the Qinghai-Tibet Plateau.

Two novel strain pairs (HM61T/HM23 and S-34T/S-58) were isolated from soil and the faeces of Tibetan antelope (Pantholops hodgsonii) collected at the Qinghai-Tibet Plateau of PR China. All four new isolates were aerobic, non-motile, Gram-stain-positive, catalase-positive, oxidase-negative, and short rod-shaped bacteria. The results of phylogenetic analysis based on the full-length 16S rRNA genes and 283 core genomic genes indicated that the four strains were separated into two independent branches belonging to the genus Nocardioides. Strains HM61T and HM23 were most closely related to Nocardioides pelophilus THG T63T (98.58 and 98.65 % 16S rRNA gene sequence similarity). Strains S-34T and S-58 were most closely related to Nocardioides okcheonensis MMS20-HV4-12T (98.89 and 98.89 % 16S rRNA gene sequence similarity). The G+C contents of the genomic DNA of strains HM61T and S-34T were 70.6 and 72.5 mol%, respectively. Strains HM61T, S-34T and the type strains of closely related species in the analysis had average nucleotide identity values of 75.4-90.5 % as well as digital DNA-DNA hybridization values between 20.1 and 40.8 %, which clearly indicated that the four isolates represent two novel species within the genus Nocardioides. The chemotaxonomic characteristics of strains HM61T and S-34T were consistent with the genus Nocardioides. The major fatty acids of all four strains were iso-C16 : 0, C17 : 1  ω8c or C18 : 1  ω9c. For strains HM61T and S-34T, MK-8(H4) was the predominant respiratory quinone, ll-2,6-diaminopimelic acid was the diagnostic diamino acid in the cell-wall peptidoglycan, and the polar lipids profiles were composed of diphosphatidylglycerol and phosphatidylglycerol. Based on phylogenetic, phenotypic, and chemotaxonomic data, we propose that strains HM61T and S-34T represent two novel species of the genus Nocardioides, respectively, with the names Nocardioides bizhenqiangii sp. nov. and Nocardioides renjunii sp. nov. The type strains are HM61T (=GDMCC 4.343T=JCM 36399T) and S-34T (=CGMCC 4.7664T=JCM 33792T).

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
ACS Applied Bio Materials
ACS Applied Bio Materials Chemistry-Chemistry (all)
CiteScore
9.40
自引率
2.10%
发文量
464
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信