Xin-Yue Zhang, Yu-Qi Ye, Yan-Jun Feng, Hong-Nan Gong, Zong-Jun Du, Meng-Qi Ye
{"title":"从潮间带沉积物中分离出的 Elongatibacter sediminis gen.","authors":"Xin-Yue Zhang, Yu-Qi Ye, Yan-Jun Feng, Hong-Nan Gong, Zong-Jun Du, Meng-Qi Ye","doi":"10.1099/ijsem.0.006440","DOIUrl":null,"url":null,"abstract":"<p><p>A novel slightly halophilic, aerobic, and Gram-stain-negative strain, designated as CH-27<sup>T</sup>, was isolated during a bacterial resource investigation of intertidal sediment collected from Xiaoshi Island in Weihai, PR China. Cells of strain CH-27<sup>T</sup> were rod-shaped with widths of 0.3-0.6 µm and lengths of 2.0-11.0 µm. Strain CH-27<sup>T</sup> grew optimally at 37 °C, pH 7.0 and with 2.0 % (w/v) NaCl. Catalase activity was weakly positive and oxidase activity was positive. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain CH-27<sup>T</sup> was most related to <i>Marinihelvus fidelis</i> KCTC 92639<sup>T</sup> (93.6 %), followed by <i>Wenzhouxiangella marina</i> MCCC 1K00261<sup>T</sup> (92.0 %). Based on genome comparisons between strain CH-27<sup>T</sup> and <i>M. fidelis</i> KCTC 92639<sup>T</sup>, the average amino acid identity was 63.6 % and the percentage of conserved proteins was 48.3 %. The major cellular fatty acid of strain CH-27<sup>T</sup> (≥10 %) was iso-C<sub>15 : 0</sub> and the sole respiratory quinone was quinone-8. The polar lipids were phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol, and aminophospholipid. The DNA G+C content was 62.7 mol%. Based on comprehensive analysis of its phylogenetic, physiological, biochemical, and chemotaxonomic characteristics, strain CH-27<sup>T</sup> represents a novel species in a novel genus, for which the name <i>Elongatibacter sediminis</i> gen. nov., sp.nov. is proposed. The type strain is CH-27<sup>T</sup> (=MCCC 1H00480<sup>T</sup>=KCTC 8011<sup>T</sup>).</p>","PeriodicalId":14390,"journal":{"name":"International journal of systematic and evolutionary microbiology","volume":"74 7","pages":""},"PeriodicalIF":2.0000,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"<i>Elongatibacter sediminis</i> gen. nov., sp. nov., isolated from intertidal sediment, and genomic comparison with all genera in the family <i>Wenzhouxiangellaceae</i>.\",\"authors\":\"Xin-Yue Zhang, Yu-Qi Ye, Yan-Jun Feng, Hong-Nan Gong, Zong-Jun Du, Meng-Qi Ye\",\"doi\":\"10.1099/ijsem.0.006440\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>A novel slightly halophilic, aerobic, and Gram-stain-negative strain, designated as CH-27<sup>T</sup>, was isolated during a bacterial resource investigation of intertidal sediment collected from Xiaoshi Island in Weihai, PR China. Cells of strain CH-27<sup>T</sup> were rod-shaped with widths of 0.3-0.6 µm and lengths of 2.0-11.0 µm. Strain CH-27<sup>T</sup> grew optimally at 37 °C, pH 7.0 and with 2.0 % (w/v) NaCl. Catalase activity was weakly positive and oxidase activity was positive. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain CH-27<sup>T</sup> was most related to <i>Marinihelvus fidelis</i> KCTC 92639<sup>T</sup> (93.6 %), followed by <i>Wenzhouxiangella marina</i> MCCC 1K00261<sup>T</sup> (92.0 %). Based on genome comparisons between strain CH-27<sup>T</sup> and <i>M. fidelis</i> KCTC 92639<sup>T</sup>, the average amino acid identity was 63.6 % and the percentage of conserved proteins was 48.3 %. The major cellular fatty acid of strain CH-27<sup>T</sup> (≥10 %) was iso-C<sub>15 : 0</sub> and the sole respiratory quinone was quinone-8. The polar lipids were phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol, and aminophospholipid. The DNA G+C content was 62.7 mol%. Based on comprehensive analysis of its phylogenetic, physiological, biochemical, and chemotaxonomic characteristics, strain CH-27<sup>T</sup> represents a novel species in a novel genus, for which the name <i>Elongatibacter sediminis</i> gen. nov., sp.nov. is proposed. 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Elongatibacter sediminis gen. nov., sp. nov., isolated from intertidal sediment, and genomic comparison with all genera in the family Wenzhouxiangellaceae.
A novel slightly halophilic, aerobic, and Gram-stain-negative strain, designated as CH-27T, was isolated during a bacterial resource investigation of intertidal sediment collected from Xiaoshi Island in Weihai, PR China. Cells of strain CH-27T were rod-shaped with widths of 0.3-0.6 µm and lengths of 2.0-11.0 µm. Strain CH-27T grew optimally at 37 °C, pH 7.0 and with 2.0 % (w/v) NaCl. Catalase activity was weakly positive and oxidase activity was positive. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain CH-27T was most related to Marinihelvus fidelis KCTC 92639T (93.6 %), followed by Wenzhouxiangella marina MCCC 1K00261T (92.0 %). Based on genome comparisons between strain CH-27T and M. fidelis KCTC 92639T, the average amino acid identity was 63.6 % and the percentage of conserved proteins was 48.3 %. The major cellular fatty acid of strain CH-27T (≥10 %) was iso-C15 : 0 and the sole respiratory quinone was quinone-8. The polar lipids were phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol, and aminophospholipid. The DNA G+C content was 62.7 mol%. Based on comprehensive analysis of its phylogenetic, physiological, biochemical, and chemotaxonomic characteristics, strain CH-27T represents a novel species in a novel genus, for which the name Elongatibacter sediminis gen. nov., sp.nov. is proposed. The type strain is CH-27T (=MCCC 1H00480T=KCTC 8011T).
期刊介绍:
Published by the Microbiology Society and owned by the International Committee on Systematics of Prokaryotes (ICSP), a committee of the Bacteriology and Applied Microbiology Division of the International Union of Microbiological Societies, International Journal of Systematic and Evolutionary Microbiology is the leading forum for the publication of novel microbial taxa and the ICSP’s official journal of record for prokaryotic names.
The journal welcomes high-quality research on all aspects of microbial evolution, phylogenetics and systematics, encouraging submissions on all prokaryotes, yeasts, microfungi, protozoa and microalgae across the full breadth of systematics including:
Identification, characterisation and culture preservation
Microbial evolution and biodiversity
Molecular environmental work with strong taxonomic or evolutionary content
Nomenclature
Taxonomy and phylogenetics.