Na Zhou , Dian Meng , Zhiwei Liang , Shanquan Wang
{"title":"盐度和营养条件是推动沉积物原核生物群落集结的关键因素","authors":"Na Zhou , Dian Meng , Zhiwei Liang , Shanquan Wang","doi":"10.1016/j.ibiod.2024.105848","DOIUrl":null,"url":null,"abstract":"<div><p>Despite extensive research on the geographical patterns of microbial communities, our comprehension of the mechanisms underlying their spatial distribution is still limited. Natural ecosystems provide opportunities to investigate the structure, connectivity, and assembly processes of prokaryotic communities. Saline lakes, mangroves, ocean margins, cold seeps, and open oceans as five distinct natural ecosystems exhibit varied levels of salinity and nutrient condition (carbon sources, electron donors, and electron acceptors). Based on the analysis of 197 sets of published 16S rRNA gene amplicon sequencing data on sediment samples of the five habitats, differences in salinity and nutrient conditions were identified to play a critical role in governing the composition, connectivity, and assembly process of prokaryotic communities. Specifically, unique prokaryotic community patterns were observed in these habitats, e.g., mangrove sediment communities were shown to have the highest alpha diversity and the lowest community-level ribosomal RNA gene operon (<em>rrn</em>) copy numbers, compared to the open ocean sediment communities. Positive correlation predominated connections (>80% of total connections) of the prokaryotic microbial networks in the five habitats. Communities within nutrient-rich saline lake and cold seep sediments exhibit the strongest and closest connections. Using the dissimilarity-overlap curve and null model, differences in composition, connectivity, and assembly process were found to be predominantly governed by deterministic forces. These findings enhance our understanding of microbial ecology in typical saline environments and enable us to investigate intricate ecosystems.</p></div>","PeriodicalId":13643,"journal":{"name":"International Biodeterioration & Biodegradation","volume":"193 ","pages":"Article 105848"},"PeriodicalIF":4.1000,"publicationDate":"2024-06-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Salinity and nutrient condition as key factors drive the assembly of sediment prokaryotic communities\",\"authors\":\"Na Zhou , Dian Meng , Zhiwei Liang , Shanquan Wang\",\"doi\":\"10.1016/j.ibiod.2024.105848\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Despite extensive research on the geographical patterns of microbial communities, our comprehension of the mechanisms underlying their spatial distribution is still limited. Natural ecosystems provide opportunities to investigate the structure, connectivity, and assembly processes of prokaryotic communities. Saline lakes, mangroves, ocean margins, cold seeps, and open oceans as five distinct natural ecosystems exhibit varied levels of salinity and nutrient condition (carbon sources, electron donors, and electron acceptors). Based on the analysis of 197 sets of published 16S rRNA gene amplicon sequencing data on sediment samples of the five habitats, differences in salinity and nutrient conditions were identified to play a critical role in governing the composition, connectivity, and assembly process of prokaryotic communities. Specifically, unique prokaryotic community patterns were observed in these habitats, e.g., mangrove sediment communities were shown to have the highest alpha diversity and the lowest community-level ribosomal RNA gene operon (<em>rrn</em>) copy numbers, compared to the open ocean sediment communities. Positive correlation predominated connections (>80% of total connections) of the prokaryotic microbial networks in the five habitats. Communities within nutrient-rich saline lake and cold seep sediments exhibit the strongest and closest connections. Using the dissimilarity-overlap curve and null model, differences in composition, connectivity, and assembly process were found to be predominantly governed by deterministic forces. These findings enhance our understanding of microbial ecology in typical saline environments and enable us to investigate intricate ecosystems.</p></div>\",\"PeriodicalId\":13643,\"journal\":{\"name\":\"International Biodeterioration & Biodegradation\",\"volume\":\"193 \",\"pages\":\"Article 105848\"},\"PeriodicalIF\":4.1000,\"publicationDate\":\"2024-06-27\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"International Biodeterioration & Biodegradation\",\"FirstCategoryId\":\"93\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0964830524001197\",\"RegionNum\":2,\"RegionCategory\":\"环境科学与生态学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOTECHNOLOGY & APPLIED MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"International Biodeterioration & Biodegradation","FirstCategoryId":"93","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0964830524001197","RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOTECHNOLOGY & APPLIED MICROBIOLOGY","Score":null,"Total":0}
Salinity and nutrient condition as key factors drive the assembly of sediment prokaryotic communities
Despite extensive research on the geographical patterns of microbial communities, our comprehension of the mechanisms underlying their spatial distribution is still limited. Natural ecosystems provide opportunities to investigate the structure, connectivity, and assembly processes of prokaryotic communities. Saline lakes, mangroves, ocean margins, cold seeps, and open oceans as five distinct natural ecosystems exhibit varied levels of salinity and nutrient condition (carbon sources, electron donors, and electron acceptors). Based on the analysis of 197 sets of published 16S rRNA gene amplicon sequencing data on sediment samples of the five habitats, differences in salinity and nutrient conditions were identified to play a critical role in governing the composition, connectivity, and assembly process of prokaryotic communities. Specifically, unique prokaryotic community patterns were observed in these habitats, e.g., mangrove sediment communities were shown to have the highest alpha diversity and the lowest community-level ribosomal RNA gene operon (rrn) copy numbers, compared to the open ocean sediment communities. Positive correlation predominated connections (>80% of total connections) of the prokaryotic microbial networks in the five habitats. Communities within nutrient-rich saline lake and cold seep sediments exhibit the strongest and closest connections. Using the dissimilarity-overlap curve and null model, differences in composition, connectivity, and assembly process were found to be predominantly governed by deterministic forces. These findings enhance our understanding of microbial ecology in typical saline environments and enable us to investigate intricate ecosystems.
期刊介绍:
International Biodeterioration and Biodegradation publishes original research papers and reviews on the biological causes of deterioration or degradation.