比较生理、生化和转录组分析,揭示 Cipangopaludina chinensis 应对饥饿胁迫的潜在调控机制。

IF 4.6 Q2 MATERIALS SCIENCE, BIOMATERIALS
Chang Yuan , Kangqi Zhou , Xianhui Pan, Dapeng Wang, Caiqun Zhang, Yong Lin, Zhong Chen, Junqi Qin, Xuesong Du, Yin Huang
{"title":"比较生理、生化和转录组分析,揭示 Cipangopaludina chinensis 应对饥饿胁迫的潜在调控机制。","authors":"Chang Yuan ,&nbsp;Kangqi Zhou ,&nbsp;Xianhui Pan,&nbsp;Dapeng Wang,&nbsp;Caiqun Zhang,&nbsp;Yong Lin,&nbsp;Zhong Chen,&nbsp;Junqi Qin,&nbsp;Xuesong Du,&nbsp;Yin Huang","doi":"10.1016/j.cbd.2024.101279","DOIUrl":null,"url":null,"abstract":"<div><p><em>Cipangopaludina chinensis</em>, as a financially significant species in China, represents a gastropod in nature which frequently encounters starvation stress owing to its limited prey options. However, the underlying response mechanisms to combat starvation have not been investigated in depth. We collected <em>C. chinensis</em> under several times of starvation stress (0, 7, 30, and 60 days) for nutrient, biochemical characteristics and transcriptome analyses. The results showed that prolonged starvation stress (&gt; 30 days) caused obvious fluctuations in the nutrient composition of snails, with dramatic reductions in body weight, survival and digestive enzyme activity (amylase, protease, and lipase), and markedly enhanced the antioxidant enzyme activities of the snails. Comparative transcriptome analyses revealed 3538 differentially expressed genes (DEGs), which were significantly associated with specific starvation stress-responsive pathways, including oxidative phosphorylation and alanine, aspartate, and glutamate metabolism. Then, we identified 40 candidate genes (e.g., <em>HACD2</em>, <em>Cp1</em>, <em>CYP1A2</em>, and <em>GPX1</em>) response to starvation stress through STEM and WGCNA analyses. RT-qPCR verified the accuracy and reliability of the high-throughput sequencing results. This study provides insights into snail overwintering survival and the potential regulatory mechanisms of snail adaptation to starvation stress.</p></div>","PeriodicalId":2,"journal":{"name":"ACS Applied Bio Materials","volume":null,"pages":null},"PeriodicalIF":4.6000,"publicationDate":"2024-06-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1744117X24000923/pdfft?md5=af31668e6ff42b7e71f662d9ee1292b9&pid=1-s2.0-S1744117X24000923-main.pdf","citationCount":"0","resultStr":"{\"title\":\"Comparative physiological, biochemical and transcriptomic analyses to reveal potential regulatory mechanisms in response to starvation stress in Cipangopaludina chinensis\",\"authors\":\"Chang Yuan ,&nbsp;Kangqi Zhou ,&nbsp;Xianhui Pan,&nbsp;Dapeng Wang,&nbsp;Caiqun Zhang,&nbsp;Yong Lin,&nbsp;Zhong Chen,&nbsp;Junqi Qin,&nbsp;Xuesong Du,&nbsp;Yin Huang\",\"doi\":\"10.1016/j.cbd.2024.101279\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p><em>Cipangopaludina chinensis</em>, as a financially significant species in China, represents a gastropod in nature which frequently encounters starvation stress owing to its limited prey options. However, the underlying response mechanisms to combat starvation have not been investigated in depth. We collected <em>C. chinensis</em> under several times of starvation stress (0, 7, 30, and 60 days) for nutrient, biochemical characteristics and transcriptome analyses. The results showed that prolonged starvation stress (&gt; 30 days) caused obvious fluctuations in the nutrient composition of snails, with dramatic reductions in body weight, survival and digestive enzyme activity (amylase, protease, and lipase), and markedly enhanced the antioxidant enzyme activities of the snails. Comparative transcriptome analyses revealed 3538 differentially expressed genes (DEGs), which were significantly associated with specific starvation stress-responsive pathways, including oxidative phosphorylation and alanine, aspartate, and glutamate metabolism. Then, we identified 40 candidate genes (e.g., <em>HACD2</em>, <em>Cp1</em>, <em>CYP1A2</em>, and <em>GPX1</em>) response to starvation stress through STEM and WGCNA analyses. RT-qPCR verified the accuracy and reliability of the high-throughput sequencing results. This study provides insights into snail overwintering survival and the potential regulatory mechanisms of snail adaptation to starvation stress.</p></div>\",\"PeriodicalId\":2,\"journal\":{\"name\":\"ACS Applied Bio Materials\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":4.6000,\"publicationDate\":\"2024-06-24\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.sciencedirect.com/science/article/pii/S1744117X24000923/pdfft?md5=af31668e6ff42b7e71f662d9ee1292b9&pid=1-s2.0-S1744117X24000923-main.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"ACS Applied Bio Materials\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1744117X24000923\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"MATERIALS SCIENCE, BIOMATERIALS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Applied Bio Materials","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1744117X24000923","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MATERIALS SCIENCE, BIOMATERIALS","Score":null,"Total":0}
引用次数: 0

摘要

作为中国具有重要经济价值的物种,腹足类动物在自然界中经常遇到饥饿胁迫,原因是其可选择的猎物有限。然而,人们尚未深入研究其对抗饥饿的潜在反应机制。我们采集了不同饥饿胁迫时间(0、7、30和60天)下的螯虾,对其进行了营养、生化特征和转录组分析。结果表明,长期饥饿胁迫(大于30天)导致蜗牛营养成分明显波动,体重、存活率和消化酶(淀粉酶、蛋白酶和脂肪酶)活性急剧下降,但蜗牛的抗氧化酶活性明显增强。转录组比较分析发现了3538个差异表达基因(DEGs),这些基因与特定的饥饿胁迫反应途径显著相关,包括氧化磷酸化和丙氨酸、天门冬氨酸和谷氨酸代谢。然后,我们通过 STEM 和 WGCNA 分析确定了 40 个饥饿胁迫响应候选基因(如 HACD2、Cp1、CYP1A2 和 GPX1)。RT-qPCR 验证了高通量测序结果的准确性和可靠性。这项研究有助于深入了解蜗牛的越冬存活率以及蜗牛适应饥饿胁迫的潜在调控机制。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Comparative physiological, biochemical and transcriptomic analyses to reveal potential regulatory mechanisms in response to starvation stress in Cipangopaludina chinensis

Comparative physiological, biochemical and transcriptomic analyses to reveal potential regulatory mechanisms in response to starvation stress in Cipangopaludina chinensis

Cipangopaludina chinensis, as a financially significant species in China, represents a gastropod in nature which frequently encounters starvation stress owing to its limited prey options. However, the underlying response mechanisms to combat starvation have not been investigated in depth. We collected C. chinensis under several times of starvation stress (0, 7, 30, and 60 days) for nutrient, biochemical characteristics and transcriptome analyses. The results showed that prolonged starvation stress (> 30 days) caused obvious fluctuations in the nutrient composition of snails, with dramatic reductions in body weight, survival and digestive enzyme activity (amylase, protease, and lipase), and markedly enhanced the antioxidant enzyme activities of the snails. Comparative transcriptome analyses revealed 3538 differentially expressed genes (DEGs), which were significantly associated with specific starvation stress-responsive pathways, including oxidative phosphorylation and alanine, aspartate, and glutamate metabolism. Then, we identified 40 candidate genes (e.g., HACD2, Cp1, CYP1A2, and GPX1) response to starvation stress through STEM and WGCNA analyses. RT-qPCR verified the accuracy and reliability of the high-throughput sequencing results. This study provides insights into snail overwintering survival and the potential regulatory mechanisms of snail adaptation to starvation stress.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
ACS Applied Bio Materials
ACS Applied Bio Materials Chemistry-Chemistry (all)
CiteScore
9.40
自引率
2.10%
发文量
464
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信