Rafaela da Silva Rodrigues, Natália Ferreira de Araujo, Cibeli Viana, Ricardo Seiti Yamatogi, Luís Augusto Nero
{"title":"巴西猪肉生产链中沙门氏菌分离物的整合子及其与抗性表型关系的硅学检测","authors":"Rafaela da Silva Rodrigues, Natália Ferreira de Araujo, Cibeli Viana, Ricardo Seiti Yamatogi, Luís Augusto Nero","doi":"10.1089/fpd.2023.0118","DOIUrl":null,"url":null,"abstract":"<p><p>The pork production chain is an important reservoir of antimicrobial resistant bacteria. This study identified and characterized integrons in <i>Salmonella</i> isolates from a Brazilian pork production chain and associate them with their antibiotic resistance pattern. A total of 41 whole-genome sequencing data of nontyphoidal <i>Salmonella</i> were analyzed using PlasmidSPAdes and IntegronFinder software. Nine isolates (21.9%) had some integrons identified (complete and/or incomplete). Six complete class 1 integrons were found, with streptomycin resistance genes (<i>aadA1</i>, <i>aadA2</i>) alone or downstream of a trimethoprim resistance gene (<i>dfrA1</i>, <i>dfrA12)</i>, and some also containing resistance genes for sulfonamides (<i>sul1</i>, <i>sul3</i>) and chloramphenicol (<i>cmlA1</i>). Class 2 integron was detected in only one isolate, containing <i>dfrA1</i>-<i>sat2</i>-<i>aadA1</i> gene cassettes. Five isolates harbored CALINs-clusters <i>attC</i> but lacking integrases-with antimicrobial resistance genes typically found in integron structures. In all, integrons were observed among four serotypes: Derby, Bredeney, Panama, and monophasic var. Typhimurium I 4,[5],12:i:-. The association of integrons with antibiotic resistance phenotype showed that these elements were predominantly identified in multidrug resistance isolates, and six of the seven gentamicin-resistant isolates had integrons. So, surveillance of integrons in <i>Salmonella</i> should be performed to identify the potential for the spread of antimicrobial resistance genes among bacteria.</p>","PeriodicalId":12333,"journal":{"name":"Foodborne pathogens and disease","volume":null,"pages":null},"PeriodicalIF":1.9000,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"<i>In Silico</i> Detection of Integrons and Their Relationship with Resistance Phenotype of <i>Salmonella</i> Isolates from a Brazilian Pork Production Chain.\",\"authors\":\"Rafaela da Silva Rodrigues, Natália Ferreira de Araujo, Cibeli Viana, Ricardo Seiti Yamatogi, Luís Augusto Nero\",\"doi\":\"10.1089/fpd.2023.0118\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The pork production chain is an important reservoir of antimicrobial resistant bacteria. This study identified and characterized integrons in <i>Salmonella</i> isolates from a Brazilian pork production chain and associate them with their antibiotic resistance pattern. A total of 41 whole-genome sequencing data of nontyphoidal <i>Salmonella</i> were analyzed using PlasmidSPAdes and IntegronFinder software. Nine isolates (21.9%) had some integrons identified (complete and/or incomplete). Six complete class 1 integrons were found, with streptomycin resistance genes (<i>aadA1</i>, <i>aadA2</i>) alone or downstream of a trimethoprim resistance gene (<i>dfrA1</i>, <i>dfrA12)</i>, and some also containing resistance genes for sulfonamides (<i>sul1</i>, <i>sul3</i>) and chloramphenicol (<i>cmlA1</i>). Class 2 integron was detected in only one isolate, containing <i>dfrA1</i>-<i>sat2</i>-<i>aadA1</i> gene cassettes. Five isolates harbored CALINs-clusters <i>attC</i> but lacking integrases-with antimicrobial resistance genes typically found in integron structures. In all, integrons were observed among four serotypes: Derby, Bredeney, Panama, and monophasic var. Typhimurium I 4,[5],12:i:-. The association of integrons with antibiotic resistance phenotype showed that these elements were predominantly identified in multidrug resistance isolates, and six of the seven gentamicin-resistant isolates had integrons. So, surveillance of integrons in <i>Salmonella</i> should be performed to identify the potential for the spread of antimicrobial resistance genes among bacteria.</p>\",\"PeriodicalId\":12333,\"journal\":{\"name\":\"Foodborne pathogens and disease\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":1.9000,\"publicationDate\":\"2024-06-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Foodborne pathogens and disease\",\"FirstCategoryId\":\"97\",\"ListUrlMain\":\"https://doi.org/10.1089/fpd.2023.0118\",\"RegionNum\":2,\"RegionCategory\":\"农林科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/4/3 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q3\",\"JCRName\":\"FOOD SCIENCE & TECHNOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Foodborne pathogens and disease","FirstCategoryId":"97","ListUrlMain":"https://doi.org/10.1089/fpd.2023.0118","RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/4/3 0:00:00","PubModel":"Epub","JCR":"Q3","JCRName":"FOOD SCIENCE & TECHNOLOGY","Score":null,"Total":0}
In Silico Detection of Integrons and Their Relationship with Resistance Phenotype of Salmonella Isolates from a Brazilian Pork Production Chain.
The pork production chain is an important reservoir of antimicrobial resistant bacteria. This study identified and characterized integrons in Salmonella isolates from a Brazilian pork production chain and associate them with their antibiotic resistance pattern. A total of 41 whole-genome sequencing data of nontyphoidal Salmonella were analyzed using PlasmidSPAdes and IntegronFinder software. Nine isolates (21.9%) had some integrons identified (complete and/or incomplete). Six complete class 1 integrons were found, with streptomycin resistance genes (aadA1, aadA2) alone or downstream of a trimethoprim resistance gene (dfrA1, dfrA12), and some also containing resistance genes for sulfonamides (sul1, sul3) and chloramphenicol (cmlA1). Class 2 integron was detected in only one isolate, containing dfrA1-sat2-aadA1 gene cassettes. Five isolates harbored CALINs-clusters attC but lacking integrases-with antimicrobial resistance genes typically found in integron structures. In all, integrons were observed among four serotypes: Derby, Bredeney, Panama, and monophasic var. Typhimurium I 4,[5],12:i:-. The association of integrons with antibiotic resistance phenotype showed that these elements were predominantly identified in multidrug resistance isolates, and six of the seven gentamicin-resistant isolates had integrons. So, surveillance of integrons in Salmonella should be performed to identify the potential for the spread of antimicrobial resistance genes among bacteria.
期刊介绍:
Foodborne Pathogens and Disease is one of the most inclusive scientific publications on the many disciplines that contribute to food safety. Spanning an array of issues from "farm-to-fork," the Journal bridges the gap between science and policy to reduce the burden of foodborne illness worldwide.
Foodborne Pathogens and Disease coverage includes:
Agroterrorism
Safety of organically grown and genetically modified foods
Emerging pathogens
Emergence of drug resistance
Methods and technology for rapid and accurate detection
Strategies to destroy or control foodborne pathogens
Novel strategies for the prevention and control of plant and animal diseases that impact food safety
Biosecurity issues and the implications of new regulatory guidelines
Impact of changing lifestyles and consumer demands on food safety.