缓冲鲁戈尔碘保留 DNA 片段长度

IF 2.2 4区 生物学 Q2 BIOLOGY
Integrative Organismal Biology Pub Date : 2024-06-14 eCollection Date: 2024-01-01 DOI:10.1093/iob/obae017
P M Gignac, D Valdez, A C Morhardt, L M Lynch
{"title":"缓冲鲁戈尔碘保留 DNA 片段长度","authors":"P M Gignac, D Valdez, A C Morhardt, L M Lynch","doi":"10.1093/iob/obae017","DOIUrl":null,"url":null,"abstract":"<p><p>Museum collections play a pivotal role in the advancement of biological science by preserving phenotypic and genotypic history and variation. Recently, contrast-enhanced X-ray computed tomography (CT) has aided these advances by allowing improved visualization of internal soft tissues. However, vouchered specimens could be at risk if staining techniques are destructive. For instance, the pH of unbuffered Lugol's iodine (I<sub>2</sub>KI) may be low enough to damage deoxyribonucleic acid (DNA). The extent of this risk is unknown due to a lack of rigorous evaluation of DNA quality between control and experimental samples. Here, we used formalin-fixed mice to document DNA concentrations and fragment lengths in nonstained, ethanol-preserved controls and 3 iodine-based staining preparations: (1) 1.25% weight-by-volume (wt/vol.) alcoholic iodine (I<sub>2</sub>E); (2) 3.75% wt/vol. I<sub>2</sub>KI; and (3) 3.75% wt/vol. buffered I<sub>2</sub>KI. We tested a null hypothesis of no significant difference in DNA concentrations and fragment lengths between control and treatment samples. We found that DNA concentration decreases because of staining-potentially an effect of measuring intact double-stranded DNA only. Fragment lengths, however, were significantly higher for buffered I<sub>2</sub>KI and control samples, which were not, themselves, significantly different. Our results implicate buffered I<sub>2</sub>KI as the appropriate choice for contrast-enhanced CT imaging of museum wet collections to safely maximize their potential for understanding genetic and phenotypic diversity.</p>","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":null,"pages":null},"PeriodicalIF":2.2000,"publicationDate":"2024-06-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11182668/pdf/","citationCount":"0","resultStr":"{\"title\":\"Buffered Lugol's Iodine Preserves DNA Fragment Lengths.\",\"authors\":\"P M Gignac, D Valdez, A C Morhardt, L M Lynch\",\"doi\":\"10.1093/iob/obae017\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Museum collections play a pivotal role in the advancement of biological science by preserving phenotypic and genotypic history and variation. Recently, contrast-enhanced X-ray computed tomography (CT) has aided these advances by allowing improved visualization of internal soft tissues. However, vouchered specimens could be at risk if staining techniques are destructive. For instance, the pH of unbuffered Lugol's iodine (I<sub>2</sub>KI) may be low enough to damage deoxyribonucleic acid (DNA). The extent of this risk is unknown due to a lack of rigorous evaluation of DNA quality between control and experimental samples. Here, we used formalin-fixed mice to document DNA concentrations and fragment lengths in nonstained, ethanol-preserved controls and 3 iodine-based staining preparations: (1) 1.25% weight-by-volume (wt/vol.) alcoholic iodine (I<sub>2</sub>E); (2) 3.75% wt/vol. I<sub>2</sub>KI; and (3) 3.75% wt/vol. buffered I<sub>2</sub>KI. We tested a null hypothesis of no significant difference in DNA concentrations and fragment lengths between control and treatment samples. We found that DNA concentration decreases because of staining-potentially an effect of measuring intact double-stranded DNA only. Fragment lengths, however, were significantly higher for buffered I<sub>2</sub>KI and control samples, which were not, themselves, significantly different. Our results implicate buffered I<sub>2</sub>KI as the appropriate choice for contrast-enhanced CT imaging of museum wet collections to safely maximize their potential for understanding genetic and phenotypic diversity.</p>\",\"PeriodicalId\":13666,\"journal\":{\"name\":\"Integrative Organismal Biology\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":2.2000,\"publicationDate\":\"2024-06-14\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11182668/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Integrative Organismal Biology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1093/iob/obae017\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q2\",\"JCRName\":\"BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Integrative Organismal Biology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1093/iob/obae017","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/1/1 0:00:00","PubModel":"eCollection","JCR":"Q2","JCRName":"BIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

博物馆藏品通过保存表型和基因型的历史和变异,在推动生物科学发展方面发挥着举足轻重的作用。最近,对比度增强型 X 射线计算机断层扫描(CT)改善了内部软组织的可视化,从而为这些进步提供了帮助。然而,如果染色技术具有破坏性,则凭证标本可能会面临风险。例如,未经缓冲的卢戈尔碘(I2KI)的 pH 值可能低到足以破坏脱氧核糖核酸(DNA)。由于缺乏对对照样本和实验样本 DNA 质量的严格评估,这种风险的程度尚不清楚。在此,我们使用福尔马林固定的小鼠记录未染色、乙醇保存的对照组和 3 种碘染色制剂中的 DNA 浓度和片段长度:(1) 1.25% 重量体积比(wt/vol. )的酒精碘 (I2E);(2) 3.75% 重量体积比(wt/vol. )的酒精碘 (I2KI);(3) 3.75% 重量体积比(wt/vol. )的酒精碘 (I2KI)。缓冲 I2KI。我们测试了一个零假设,即对照样本和处理样本之间的 DNA 浓度和片段长度没有显著差异。我们发现 DNA 浓度会因染色而降低,这可能是只测量完整双链 DNA 的影响。但是,缓冲 I2KI 和对照样本的片段长度明显更高,而两者本身并无明显差异。我们的研究结果表明,缓冲 I2KI 是对博物馆湿藏品进行对比增强 CT 成像的适当选择,可安全地最大限度地发挥其了解遗传和表型多样性的潜力。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Buffered Lugol's Iodine Preserves DNA Fragment Lengths.

Museum collections play a pivotal role in the advancement of biological science by preserving phenotypic and genotypic history and variation. Recently, contrast-enhanced X-ray computed tomography (CT) has aided these advances by allowing improved visualization of internal soft tissues. However, vouchered specimens could be at risk if staining techniques are destructive. For instance, the pH of unbuffered Lugol's iodine (I2KI) may be low enough to damage deoxyribonucleic acid (DNA). The extent of this risk is unknown due to a lack of rigorous evaluation of DNA quality between control and experimental samples. Here, we used formalin-fixed mice to document DNA concentrations and fragment lengths in nonstained, ethanol-preserved controls and 3 iodine-based staining preparations: (1) 1.25% weight-by-volume (wt/vol.) alcoholic iodine (I2E); (2) 3.75% wt/vol. I2KI; and (3) 3.75% wt/vol. buffered I2KI. We tested a null hypothesis of no significant difference in DNA concentrations and fragment lengths between control and treatment samples. We found that DNA concentration decreases because of staining-potentially an effect of measuring intact double-stranded DNA only. Fragment lengths, however, were significantly higher for buffered I2KI and control samples, which were not, themselves, significantly different. Our results implicate buffered I2KI as the appropriate choice for contrast-enhanced CT imaging of museum wet collections to safely maximize their potential for understanding genetic and phenotypic diversity.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
3.70
自引率
6.70%
发文量
48
审稿时长
20 weeks
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信