根据 SeqCode 描述 Asgardarchaeum abyssi gen.

IF 3.3 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
Daniel Tamarit , Stephan Köstlbacher , Kathryn E. Appler , Kassiani Panagiotou , Valerie De Anda , Christian Rinke , Brett J. Baker , Thijs J.G. Ettema
{"title":"根据 SeqCode 描述 Asgardarchaeum abyssi gen.","authors":"Daniel Tamarit ,&nbsp;Stephan Köstlbacher ,&nbsp;Kathryn E. Appler ,&nbsp;Kassiani Panagiotou ,&nbsp;Valerie De Anda ,&nbsp;Christian Rinke ,&nbsp;Brett J. Baker ,&nbsp;Thijs J.G. Ettema","doi":"10.1016/j.syapm.2024.126525","DOIUrl":null,"url":null,"abstract":"<div><p><em>Asgardarchaeota</em>, commonly referred to as Asgard archaea, is a candidatus phylum-rank archaeal clade that includes the closest archaeal relatives of eukaryotes. Despite their prevalence in the scientific literature, the name <em>Asgardarchaeota</em> lacks nomenclatural validation. Here, we describe a novel high-quality metagenome-assembled genome (MAG), AB3033_2<sup>TS</sup>, proposed to serve as the nomenclatural type for the species <em>Asgardarchaeum abyssi</em><sup>TS</sup> according to the rules of the SeqCode. Based on protein content and compositional features, we infer that <em>A. abyssi</em> AB3033_2<sup>TS</sup> is an acetogenic chemoheterotroph, possibly a facultative lithoautotroph, and is adapted to a thermophilic lifestyle. Utilizing genomes from Asgard archaea, TACK, and Euryarchaea, we perform phylogenomic reconstructions using the GTDB archaeal marker genes, the current reference set for taxonomic classification. Calibrating relative evolutionary divergence (RED) values for <em>Asgardarchaeota</em> using established <em>Thermoproteota</em> lineages in the GTDB r207 reference tree, we establish a robust classification and propose <em>Asgardarchaeum</em> as the type genus for the family <em>Asgardarchaeaceae</em> (fam. nov)., the order <em>Asgardarchaeales</em> (ord. nov.), the class <em>Asgardarchaeia</em> (class. nov.), and the phylum <em>Asgardarchaeota</em> (phyl. nov.). This effort aims to preserve taxonomic congruence in the scientific literature.</p></div>","PeriodicalId":22124,"journal":{"name":"Systematic and applied microbiology","volume":null,"pages":null},"PeriodicalIF":3.3000,"publicationDate":"2024-06-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S0723202024000390/pdfft?md5=1ae401ded59e8ae03224a402356a7cfa&pid=1-s2.0-S0723202024000390-main.pdf","citationCount":"0","resultStr":"{\"title\":\"Description of Asgardarchaeum abyssi gen. nov. spec. nov., a novel species within the class Asgardarchaeia and phylum Asgardarchaeota in accordance with the SeqCode\",\"authors\":\"Daniel Tamarit ,&nbsp;Stephan Köstlbacher ,&nbsp;Kathryn E. Appler ,&nbsp;Kassiani Panagiotou ,&nbsp;Valerie De Anda ,&nbsp;Christian Rinke ,&nbsp;Brett J. Baker ,&nbsp;Thijs J.G. Ettema\",\"doi\":\"10.1016/j.syapm.2024.126525\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p><em>Asgardarchaeota</em>, commonly referred to as Asgard archaea, is a candidatus phylum-rank archaeal clade that includes the closest archaeal relatives of eukaryotes. Despite their prevalence in the scientific literature, the name <em>Asgardarchaeota</em> lacks nomenclatural validation. Here, we describe a novel high-quality metagenome-assembled genome (MAG), AB3033_2<sup>TS</sup>, proposed to serve as the nomenclatural type for the species <em>Asgardarchaeum abyssi</em><sup>TS</sup> according to the rules of the SeqCode. Based on protein content and compositional features, we infer that <em>A. abyssi</em> AB3033_2<sup>TS</sup> is an acetogenic chemoheterotroph, possibly a facultative lithoautotroph, and is adapted to a thermophilic lifestyle. Utilizing genomes from Asgard archaea, TACK, and Euryarchaea, we perform phylogenomic reconstructions using the GTDB archaeal marker genes, the current reference set for taxonomic classification. Calibrating relative evolutionary divergence (RED) values for <em>Asgardarchaeota</em> using established <em>Thermoproteota</em> lineages in the GTDB r207 reference tree, we establish a robust classification and propose <em>Asgardarchaeum</em> as the type genus for the family <em>Asgardarchaeaceae</em> (fam. nov)., the order <em>Asgardarchaeales</em> (ord. nov.), the class <em>Asgardarchaeia</em> (class. nov.), and the phylum <em>Asgardarchaeota</em> (phyl. nov.). This effort aims to preserve taxonomic congruence in the scientific literature.</p></div>\",\"PeriodicalId\":22124,\"journal\":{\"name\":\"Systematic and applied microbiology\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":3.3000,\"publicationDate\":\"2024-06-15\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.sciencedirect.com/science/article/pii/S0723202024000390/pdfft?md5=1ae401ded59e8ae03224a402356a7cfa&pid=1-s2.0-S0723202024000390-main.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Systematic and applied microbiology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0723202024000390\",\"RegionNum\":2,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOTECHNOLOGY & APPLIED MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Systematic and applied microbiology","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0723202024000390","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOTECHNOLOGY & APPLIED MICROBIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

阿斯加德古菌群(Asgardarchaeota)通常被称为阿斯加德古菌,是一个候选的门级古菌支系,包括真核生物的近缘古菌。尽管它们在科学文献中很常见,但阿斯加德古菌群(Asgardarchaeota)这一名称缺乏命名学上的验证。这里,我们描述了一个新的高质量元基因组组装基因组(MAG)--AB3033_2TS,建议根据 SeqCode 规则将其作为 Asgardarchaeum abyssiTS 这一物种的命名类型。根据蛋白质含量和组成特征,我们推断阿贝斯藻 AB3033_2TS 是一种产乙酸的化合自养型生物,可能是一种面性自养型生物,并适应嗜热的生活方式。我们利用来自阿斯加德古菌、TACK 和 Euryarchaea 的基因组,使用 GTDB 古菌标记基因(目前的分类参考集)进行了系统发生组重建。通过使用 GTDB r207 参考树中已建立的热蛋白类系校准 Asgardarchaeota 的相对进化差异(RED)值,我们建立了一个稳健的分类,并提议将 Asgardarchaeum 作为 Asgardarchaeaceae 科(新科)、Asgardarchaeales 目(新目)、Asgardarchaeia 类(新类)和 Asgardarchaeota 门(新门)的模式属。这项工作旨在保持科学文献中分类学的一致性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Description of Asgardarchaeum abyssi gen. nov. spec. nov., a novel species within the class Asgardarchaeia and phylum Asgardarchaeota in accordance with the SeqCode

Asgardarchaeota, commonly referred to as Asgard archaea, is a candidatus phylum-rank archaeal clade that includes the closest archaeal relatives of eukaryotes. Despite their prevalence in the scientific literature, the name Asgardarchaeota lacks nomenclatural validation. Here, we describe a novel high-quality metagenome-assembled genome (MAG), AB3033_2TS, proposed to serve as the nomenclatural type for the species Asgardarchaeum abyssiTS according to the rules of the SeqCode. Based on protein content and compositional features, we infer that A. abyssi AB3033_2TS is an acetogenic chemoheterotroph, possibly a facultative lithoautotroph, and is adapted to a thermophilic lifestyle. Utilizing genomes from Asgard archaea, TACK, and Euryarchaea, we perform phylogenomic reconstructions using the GTDB archaeal marker genes, the current reference set for taxonomic classification. Calibrating relative evolutionary divergence (RED) values for Asgardarchaeota using established Thermoproteota lineages in the GTDB r207 reference tree, we establish a robust classification and propose Asgardarchaeum as the type genus for the family Asgardarchaeaceae (fam. nov)., the order Asgardarchaeales (ord. nov.), the class Asgardarchaeia (class. nov.), and the phylum Asgardarchaeota (phyl. nov.). This effort aims to preserve taxonomic congruence in the scientific literature.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Systematic and applied microbiology
Systematic and applied microbiology 生物-生物工程与应用微生物
CiteScore
7.50
自引率
5.90%
发文量
57
审稿时长
22 days
期刊介绍: Systematic and Applied Microbiology deals with various aspects of microbial diversity and systematics of prokaryotes. It focuses on Bacteria and Archaea; eukaryotic microorganisms will only be considered in rare cases. The journal perceives a broad understanding of microbial diversity and encourages the submission of manuscripts from the following branches of microbiology:
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信