PK Sreya , Atham Hari Naga Papa Rao , Gandham Suresh , Chintalapati Sasikala , Chintalapati Venkata Ramana
{"title":"对一种觅食粘蛋白的 Rhodopirellula halodulae sp.十一月","authors":"PK Sreya , Atham Hari Naga Papa Rao , Gandham Suresh , Chintalapati Sasikala , Chintalapati Venkata Ramana","doi":"10.1016/j.syapm.2024.126523","DOIUrl":null,"url":null,"abstract":"<div><p>Nine novel strains were obtained from various algal and seagrass samples. The analysis of the 16S rRNA gene-based phylogenetic tree revealed monophyletic placement of all novel strains within the <em>Rhodopirellula</em> genus. The type strain was identified as JC737<sup>T</sup>, which shared 99.1 % 16S rRNA gene sequence identity with <em>Rhodopirellula baltica</em> SH1<sup>T</sup>, while strain JC740 was designated as an additional strain. The genome sizes of strains JC737<sup>T</sup> and JC740 were 6.6 and 6.7 Mb, respectively, and the G + C content was 56.2 %. The strains cladded distinctly in the phylogenomic tree, and the ANI and <em>d</em>DDH values of the strain JC737<sup>T</sup> were 75.8–76.1 % and 20.8–21.3 %, respectively, in comparison to other <em>Rhodopirellula</em> members. The strain demonstrated a versatile degradation capability, exhibiting a diverse array of complex polysaccharides, including mucin which had not been previously identified within the members of the phylum <em>Planctomycetota</em>. The phylogenomic, pan-genomic, morphological, physiological, and genomic characterization of the strain lead to the proposal to describe the strain as <em>Rhodopirellula halodulae</em> sp. nov.</p></div>","PeriodicalId":22124,"journal":{"name":"Systematic and applied microbiology","volume":"47 4","pages":"Article 126523"},"PeriodicalIF":3.3000,"publicationDate":"2024-06-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Genomic and functional insights of a mucin foraging Rhodopirellula halodulae sp. nov.\",\"authors\":\"PK Sreya , Atham Hari Naga Papa Rao , Gandham Suresh , Chintalapati Sasikala , Chintalapati Venkata Ramana\",\"doi\":\"10.1016/j.syapm.2024.126523\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Nine novel strains were obtained from various algal and seagrass samples. The analysis of the 16S rRNA gene-based phylogenetic tree revealed monophyletic placement of all novel strains within the <em>Rhodopirellula</em> genus. The type strain was identified as JC737<sup>T</sup>, which shared 99.1 % 16S rRNA gene sequence identity with <em>Rhodopirellula baltica</em> SH1<sup>T</sup>, while strain JC740 was designated as an additional strain. The genome sizes of strains JC737<sup>T</sup> and JC740 were 6.6 and 6.7 Mb, respectively, and the G + C content was 56.2 %. The strains cladded distinctly in the phylogenomic tree, and the ANI and <em>d</em>DDH values of the strain JC737<sup>T</sup> were 75.8–76.1 % and 20.8–21.3 %, respectively, in comparison to other <em>Rhodopirellula</em> members. The strain demonstrated a versatile degradation capability, exhibiting a diverse array of complex polysaccharides, including mucin which had not been previously identified within the members of the phylum <em>Planctomycetota</em>. The phylogenomic, pan-genomic, morphological, physiological, and genomic characterization of the strain lead to the proposal to describe the strain as <em>Rhodopirellula halodulae</em> sp. nov.</p></div>\",\"PeriodicalId\":22124,\"journal\":{\"name\":\"Systematic and applied microbiology\",\"volume\":\"47 4\",\"pages\":\"Article 126523\"},\"PeriodicalIF\":3.3000,\"publicationDate\":\"2024-06-12\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Systematic and applied microbiology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0723202024000377\",\"RegionNum\":2,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOTECHNOLOGY & APPLIED MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Systematic and applied microbiology","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0723202024000377","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOTECHNOLOGY & APPLIED MICROBIOLOGY","Score":null,"Total":0}
Genomic and functional insights of a mucin foraging Rhodopirellula halodulae sp. nov.
Nine novel strains were obtained from various algal and seagrass samples. The analysis of the 16S rRNA gene-based phylogenetic tree revealed monophyletic placement of all novel strains within the Rhodopirellula genus. The type strain was identified as JC737T, which shared 99.1 % 16S rRNA gene sequence identity with Rhodopirellula baltica SH1T, while strain JC740 was designated as an additional strain. The genome sizes of strains JC737T and JC740 were 6.6 and 6.7 Mb, respectively, and the G + C content was 56.2 %. The strains cladded distinctly in the phylogenomic tree, and the ANI and dDDH values of the strain JC737T were 75.8–76.1 % and 20.8–21.3 %, respectively, in comparison to other Rhodopirellula members. The strain demonstrated a versatile degradation capability, exhibiting a diverse array of complex polysaccharides, including mucin which had not been previously identified within the members of the phylum Planctomycetota. The phylogenomic, pan-genomic, morphological, physiological, and genomic characterization of the strain lead to the proposal to describe the strain as Rhodopirellula halodulae sp. nov.
期刊介绍:
Systematic and Applied Microbiology deals with various aspects of microbial diversity and systematics of prokaryotes. It focuses on Bacteria and Archaea; eukaryotic microorganisms will only be considered in rare cases. The journal perceives a broad understanding of microbial diversity and encourages the submission of manuscripts from the following branches of microbiology: