Hong-Mei Li , Jin-Xin Zheng , Nicholas Midzi , Masceline Jenipher Mutsaka- Makuvaza , Shan Lv , Shang Xia , Ying-jun Qian , Ning Xiao , Robert Berguist , Xiao-Nong Zhou
{"title":"津巴布韦的血吸虫病传播:基于机器学习的建模","authors":"Hong-Mei Li , Jin-Xin Zheng , Nicholas Midzi , Masceline Jenipher Mutsaka- Makuvaza , Shan Lv , Shang Xia , Ying-jun Qian , Ning Xiao , Robert Berguist , Xiao-Nong Zhou","doi":"10.1016/j.idm.2024.06.001","DOIUrl":null,"url":null,"abstract":"<div><p>Zimbabwe, located in Southern Africa, faces a significant public health challenge due to schistosomiasis. We investigated this issue with emphasis on risk prediction of schistosomiasis for the entire population. To this end, we reviewed available data on schistosomiasis in Zimbabwe from a literature search covering the 1980-2022 period considering the potential impact of 26 environmental and socioeconomic variables obtained from public sources. We studied the population requiring praziquantel with regard to whether or not mass drug administration (MDA) had been regularly applied. Three machine-learning algorithms were tested for their ability to predict the prevalence of schistosomiasis in Zimbabwe based on the mean absolute error (MAE), the root mean squared error (RMSE) and the coefficient of determination (R<sup>2</sup>). The findings revealed different roles of the 26 factors with respect to transmission and there were particular variations between <em>Schistosoma haematobium</em> and <em>S. mansoni</em> infections. We found that the top-five correlation factors, such as the past (rather than current) time, unsettled MDA implementation, constrained economy, high rainfall during the warmest season, and high annual precipitation were closely associated with higher <em>S. haematobium</em> prevalence, while lower elevation, high rainfall during the warmest season, steeper slope, past (rather than current) time, and higher minimum temperature in the coldest month were rather related to higher <em>S. mansoni</em> prevalence. The random forest (RF) algorithm was considered as the formal best model construction method, with MAE = 0.108; RMSE = 0.143; and R<sup>2</sup> = 0.517 for <em>S. haematobium</em>, and with the corresponding figures for <em>S. mansoni</em> being 0.053; 0.082; and 0.458. Based on this optimal model, the current total schistosomiasis prevalence in Zimbabwe under MDA implementation was 19.8%, with that of <em>S. haematobium</em> at 13.8% and that of <em>S. mansoni</em> at 7.1%, requiring annual MDA based on a population of 3,003,928. Without MDA, the current total schistosomiasis prevalence would be 23.2%, that of <em>S. haematobium</em> 17.1% and that of <em>S. mansoni</em> prevalence at 7.4%, requiring annual MDA based on a population of 3,521,466. The study reveals that MDA alone is insufficient for schistosomiasis elimination, especially that due to <em>S. mansoni</em>. This study predicts a moderate prevalence of schistosomiasis in Zimbabwe, with its elimination requiring comprehensive control measures beyond the currently used strategies, including health education, snail control, population surveillance and environmental management.</p></div>","PeriodicalId":36831,"journal":{"name":"Infectious Disease Modelling","volume":"9 4","pages":"Pages 1081-1094"},"PeriodicalIF":8.8000,"publicationDate":"2024-06-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2468042724000836/pdfft?md5=0ca0fe15be3a0ff21ec6513e3e69e6d6&pid=1-s2.0-S2468042724000836-main.pdf","citationCount":"0","resultStr":"{\"title\":\"Schistosomiasis transmission in Zimbabwe: Modelling based on machine learning\",\"authors\":\"Hong-Mei Li , Jin-Xin Zheng , Nicholas Midzi , Masceline Jenipher Mutsaka- Makuvaza , Shan Lv , Shang Xia , Ying-jun Qian , Ning Xiao , Robert Berguist , Xiao-Nong Zhou\",\"doi\":\"10.1016/j.idm.2024.06.001\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Zimbabwe, located in Southern Africa, faces a significant public health challenge due to schistosomiasis. We investigated this issue with emphasis on risk prediction of schistosomiasis for the entire population. To this end, we reviewed available data on schistosomiasis in Zimbabwe from a literature search covering the 1980-2022 period considering the potential impact of 26 environmental and socioeconomic variables obtained from public sources. We studied the population requiring praziquantel with regard to whether or not mass drug administration (MDA) had been regularly applied. Three machine-learning algorithms were tested for their ability to predict the prevalence of schistosomiasis in Zimbabwe based on the mean absolute error (MAE), the root mean squared error (RMSE) and the coefficient of determination (R<sup>2</sup>). The findings revealed different roles of the 26 factors with respect to transmission and there were particular variations between <em>Schistosoma haematobium</em> and <em>S. mansoni</em> infections. We found that the top-five correlation factors, such as the past (rather than current) time, unsettled MDA implementation, constrained economy, high rainfall during the warmest season, and high annual precipitation were closely associated with higher <em>S. haematobium</em> prevalence, while lower elevation, high rainfall during the warmest season, steeper slope, past (rather than current) time, and higher minimum temperature in the coldest month were rather related to higher <em>S. mansoni</em> prevalence. The random forest (RF) algorithm was considered as the formal best model construction method, with MAE = 0.108; RMSE = 0.143; and R<sup>2</sup> = 0.517 for <em>S. haematobium</em>, and with the corresponding figures for <em>S. mansoni</em> being 0.053; 0.082; and 0.458. Based on this optimal model, the current total schistosomiasis prevalence in Zimbabwe under MDA implementation was 19.8%, with that of <em>S. haematobium</em> at 13.8% and that of <em>S. mansoni</em> at 7.1%, requiring annual MDA based on a population of 3,003,928. Without MDA, the current total schistosomiasis prevalence would be 23.2%, that of <em>S. haematobium</em> 17.1% and that of <em>S. mansoni</em> prevalence at 7.4%, requiring annual MDA based on a population of 3,521,466. The study reveals that MDA alone is insufficient for schistosomiasis elimination, especially that due to <em>S. mansoni</em>. 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Schistosomiasis transmission in Zimbabwe: Modelling based on machine learning
Zimbabwe, located in Southern Africa, faces a significant public health challenge due to schistosomiasis. We investigated this issue with emphasis on risk prediction of schistosomiasis for the entire population. To this end, we reviewed available data on schistosomiasis in Zimbabwe from a literature search covering the 1980-2022 period considering the potential impact of 26 environmental and socioeconomic variables obtained from public sources. We studied the population requiring praziquantel with regard to whether or not mass drug administration (MDA) had been regularly applied. Three machine-learning algorithms were tested for their ability to predict the prevalence of schistosomiasis in Zimbabwe based on the mean absolute error (MAE), the root mean squared error (RMSE) and the coefficient of determination (R2). The findings revealed different roles of the 26 factors with respect to transmission and there were particular variations between Schistosoma haematobium and S. mansoni infections. We found that the top-five correlation factors, such as the past (rather than current) time, unsettled MDA implementation, constrained economy, high rainfall during the warmest season, and high annual precipitation were closely associated with higher S. haematobium prevalence, while lower elevation, high rainfall during the warmest season, steeper slope, past (rather than current) time, and higher minimum temperature in the coldest month were rather related to higher S. mansoni prevalence. The random forest (RF) algorithm was considered as the formal best model construction method, with MAE = 0.108; RMSE = 0.143; and R2 = 0.517 for S. haematobium, and with the corresponding figures for S. mansoni being 0.053; 0.082; and 0.458. Based on this optimal model, the current total schistosomiasis prevalence in Zimbabwe under MDA implementation was 19.8%, with that of S. haematobium at 13.8% and that of S. mansoni at 7.1%, requiring annual MDA based on a population of 3,003,928. Without MDA, the current total schistosomiasis prevalence would be 23.2%, that of S. haematobium 17.1% and that of S. mansoni prevalence at 7.4%, requiring annual MDA based on a population of 3,521,466. The study reveals that MDA alone is insufficient for schistosomiasis elimination, especially that due to S. mansoni. This study predicts a moderate prevalence of schistosomiasis in Zimbabwe, with its elimination requiring comprehensive control measures beyond the currently used strategies, including health education, snail control, population surveillance and environmental management.
期刊介绍:
Infectious Disease Modelling is an open access journal that undergoes peer-review. Its main objective is to facilitate research that combines mathematical modelling, retrieval and analysis of infection disease data, and public health decision support. The journal actively encourages original research that improves this interface, as well as review articles that highlight innovative methodologies relevant to data collection, informatics, and policy making in the field of public health.