射枪元基因组学揭示了与巴尔伯海马(Hippocampus barbouri)相关的微生物组的分类和功能模式。

IF 2.6 3区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
Rose Chinly Mae H. Ortega-Kindica, Chinee S. Padasas-Adalla, Sharon Rose M. Tabugo, Joey Genevieve T. Martinez, Olive A. Amparado, Carlo Stephen O. Moneva, Rodelyn Dalayap, Carlos O. Lomeli-Ortega, Jose Luis Balcazar
{"title":"射枪元基因组学揭示了与巴尔伯海马(Hippocampus barbouri)相关的微生物组的分类和功能模式。","authors":"Rose Chinly Mae H. Ortega-Kindica,&nbsp;Chinee S. Padasas-Adalla,&nbsp;Sharon Rose M. Tabugo,&nbsp;Joey Genevieve T. Martinez,&nbsp;Olive A. Amparado,&nbsp;Carlo Stephen O. Moneva,&nbsp;Rodelyn Dalayap,&nbsp;Carlos O. Lomeli-Ortega,&nbsp;Jose Luis Balcazar","doi":"10.1007/s10126-024-10330-y","DOIUrl":null,"url":null,"abstract":"<div><p>This study aimed to investigate the taxonomic and functional patterns of the microbiome associated with Barbour’s seahorse (<i>Hippocampus barbouri</i>) using a combination of shotgun metagenomics and bioinformatics. The analyses revealed that Pseudomonadota and Bacillota were the dominant phyla in the seahorse skin microbiome, whereas Pseudomonadota and, to a lesser extent, Bacillota and Bacteroidota were the dominant phyla in the seahorse gut microbiome. Several metabolic pathway categories were found to be enriched in the skin microbiome, including amino acid metabolism, carbohydrate metabolism, cofactor and vitamin metabolism, energy metabolism, nucleotide metabolism, as well as membrane transport, signal transduction, and cellular community-prokaryotes. In contrast, the gut microbiome exhibited enrichment in metabolic pathways associated with the metabolism of terpenoids and polyketides, biosynthesis of other secondary metabolites, xenobiotics biodegradation and metabolism, and quorum sensing. Additionally, although the relative abundance of bacteriocins in the skin and gut was slightly similar, notable differences were observed at the class level. Specifically, class I bacteriocins were found to be more abundant in the skin microbiome, whereas class III bacteriocins were more abundant in the gut microbiome. To the best of our knowledge, this study represents the first comprehensive examination of the taxonomic and functional patterns of the skin and gut microbiome in Barbour’s seahorse. These findings can greatly contribute to a deeper understanding of the seahorse-associated microbiome, which can play a pivotal role in predicting and controlling bacterial infections, thereby contributing to the success of aquaculture and health-promoting initiatives.</p></div>","PeriodicalId":690,"journal":{"name":"Marine Biotechnology","volume":"26 4","pages":"835 - 841"},"PeriodicalIF":2.6000,"publicationDate":"2024-06-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Shotgun Metagenomics Reveals Taxonomic and Functional Patterns of the Microbiome Associated with Barbour’s Seahorse (Hippocampus barbouri)\",\"authors\":\"Rose Chinly Mae H. Ortega-Kindica,&nbsp;Chinee S. Padasas-Adalla,&nbsp;Sharon Rose M. Tabugo,&nbsp;Joey Genevieve T. Martinez,&nbsp;Olive A. Amparado,&nbsp;Carlo Stephen O. Moneva,&nbsp;Rodelyn Dalayap,&nbsp;Carlos O. Lomeli-Ortega,&nbsp;Jose Luis Balcazar\",\"doi\":\"10.1007/s10126-024-10330-y\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>This study aimed to investigate the taxonomic and functional patterns of the microbiome associated with Barbour’s seahorse (<i>Hippocampus barbouri</i>) using a combination of shotgun metagenomics and bioinformatics. The analyses revealed that Pseudomonadota and Bacillota were the dominant phyla in the seahorse skin microbiome, whereas Pseudomonadota and, to a lesser extent, Bacillota and Bacteroidota were the dominant phyla in the seahorse gut microbiome. Several metabolic pathway categories were found to be enriched in the skin microbiome, including amino acid metabolism, carbohydrate metabolism, cofactor and vitamin metabolism, energy metabolism, nucleotide metabolism, as well as membrane transport, signal transduction, and cellular community-prokaryotes. In contrast, the gut microbiome exhibited enrichment in metabolic pathways associated with the metabolism of terpenoids and polyketides, biosynthesis of other secondary metabolites, xenobiotics biodegradation and metabolism, and quorum sensing. Additionally, although the relative abundance of bacteriocins in the skin and gut was slightly similar, notable differences were observed at the class level. Specifically, class I bacteriocins were found to be more abundant in the skin microbiome, whereas class III bacteriocins were more abundant in the gut microbiome. To the best of our knowledge, this study represents the first comprehensive examination of the taxonomic and functional patterns of the skin and gut microbiome in Barbour’s seahorse. These findings can greatly contribute to a deeper understanding of the seahorse-associated microbiome, which can play a pivotal role in predicting and controlling bacterial infections, thereby contributing to the success of aquaculture and health-promoting initiatives.</p></div>\",\"PeriodicalId\":690,\"journal\":{\"name\":\"Marine Biotechnology\",\"volume\":\"26 4\",\"pages\":\"835 - 841\"},\"PeriodicalIF\":2.6000,\"publicationDate\":\"2024-06-12\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Marine Biotechnology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s10126-024-10330-y\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"BIOTECHNOLOGY & APPLIED MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Marine Biotechnology","FirstCategoryId":"99","ListUrlMain":"https://link.springer.com/article/10.1007/s10126-024-10330-y","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"BIOTECHNOLOGY & APPLIED MICROBIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

本研究旨在利用枪式元基因组学和生物信息学相结合的方法,研究与巴氏海马(Hippocampus barbouri)相关的微生物组的分类和功能模式。分析表明,假单胞菌和芽孢杆菌是海马皮肤微生物组中的优势菌门,而假单胞菌和芽孢杆菌是海马肠道微生物组中的优势菌门,其次是芽孢杆菌和类杆菌。研究发现,皮肤微生物组中富含多个代谢途径类别,包括氨基酸代谢、碳水化合物代谢、辅因子和维生素代谢、能量代谢、核苷酸代谢以及膜转运、信号转导和细胞群落-原核生物。相比之下,肠道微生物群在与萜类化合物和多酮类化合物代谢、其他次级代谢物的生物合成、异种生物降解和代谢以及法定人数感应有关的代谢途径方面表现出丰富性。此外,虽然皮肤和肠道中细菌素的相对丰度略有相似,但在类别水平上却存在明显差异。具体来说,第一类细菌素在皮肤微生物组中含量更高,而第三类细菌素在肠道微生物组中含量更高。据我们所知,这项研究是首次对巴尔伯氏海马皮肤和肠道微生物组的分类和功能模式进行全面研究。这些发现将大大有助于加深对海马相关微生物组的了解,从而在预测和控制细菌感染方面发挥关键作用,进而促进水产养殖和健康促进计划的成功。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Shotgun Metagenomics Reveals Taxonomic and Functional Patterns of the Microbiome Associated with Barbour’s Seahorse (Hippocampus barbouri)

Shotgun Metagenomics Reveals Taxonomic and Functional Patterns of the Microbiome Associated with Barbour’s Seahorse (Hippocampus barbouri)

This study aimed to investigate the taxonomic and functional patterns of the microbiome associated with Barbour’s seahorse (Hippocampus barbouri) using a combination of shotgun metagenomics and bioinformatics. The analyses revealed that Pseudomonadota and Bacillota were the dominant phyla in the seahorse skin microbiome, whereas Pseudomonadota and, to a lesser extent, Bacillota and Bacteroidota were the dominant phyla in the seahorse gut microbiome. Several metabolic pathway categories were found to be enriched in the skin microbiome, including amino acid metabolism, carbohydrate metabolism, cofactor and vitamin metabolism, energy metabolism, nucleotide metabolism, as well as membrane transport, signal transduction, and cellular community-prokaryotes. In contrast, the gut microbiome exhibited enrichment in metabolic pathways associated with the metabolism of terpenoids and polyketides, biosynthesis of other secondary metabolites, xenobiotics biodegradation and metabolism, and quorum sensing. Additionally, although the relative abundance of bacteriocins in the skin and gut was slightly similar, notable differences were observed at the class level. Specifically, class I bacteriocins were found to be more abundant in the skin microbiome, whereas class III bacteriocins were more abundant in the gut microbiome. To the best of our knowledge, this study represents the first comprehensive examination of the taxonomic and functional patterns of the skin and gut microbiome in Barbour’s seahorse. These findings can greatly contribute to a deeper understanding of the seahorse-associated microbiome, which can play a pivotal role in predicting and controlling bacterial infections, thereby contributing to the success of aquaculture and health-promoting initiatives.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Marine Biotechnology
Marine Biotechnology 工程技术-海洋与淡水生物学
CiteScore
4.80
自引率
3.30%
发文量
95
审稿时长
2 months
期刊介绍: Marine Biotechnology welcomes high-quality research papers presenting novel data on the biotechnology of aquatic organisms. The journal publishes high quality papers in the areas of molecular biology, genomics, proteomics, cell biology, and biochemistry, and particularly encourages submissions of papers related to genome biology such as linkage mapping, large-scale gene discoveries, QTL analysis, physical mapping, and comparative and functional genome analysis. Papers on technological development and marine natural products should demonstrate innovation and novel applications.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信