基于 DCE-MRI 的放射转录组学模型,用于预测胆管癌的肿瘤免疫格局和免疫疗法。

IF 5.7 4区 生物学 Q1 BIOLOGY
Bioscience trends Pub Date : 2024-07-09 Epub Date: 2024-06-10 DOI:10.5582/bst.2024.01121
Lu Chen, Guotao Yin, Ziyang Wang, Zifan Liu, Chunxiao Sui, Kun Chen, Tianqiang Song, Wengui Xu, Lisha Qi, Xiaofeng Li
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引用次数: 0

摘要

本研究旨在确定动态对比增强磁共振成像(DCE-MRI)衍生的放射组学模型在肿瘤免疫分析和胆管癌免疫治疗中的预测作用。为了进行放射组学分析,首先通过单样本基因组富集分析(ssGSEA)进行了免疫相关亚组聚类。其次,利用 Python 软件包 Pyradiomics 提取了 DCE-MRI 各期共 806 个放射体特征。然后,经过三步特征缩减和选择,构建了一个预测性放射特征模型,并利用接收者操作特征曲线(ROC)来评估该模型的性能。最后,研究人员使用了一个独立的测试队列,其中包括术后接受抗 PD-1 Sintilimab 治疗的胆管癌患者,以验证所建立的放射学模型在胆管癌免疫治疗中的潜在应用。根据转录组测序结果,使用ssGSEA对两个不同的免疫相关亚组进行了分类。在放射组学分析方面,最终确定了共 10 个预测性放射组学特征,从而建立了用于免疫景观分类的放射组学特征模型。在预测性能方面,训练/验证队列的 ROC 曲线平均 AUC 为 0.80。在独立测试队列中,放射组模型的个体预测概率与ssGSEA得出的相应免疫评分有显著相关性。总之,基于 DCE-MRI 的放射特征模型能够预测胆管癌的免疫状况。因此,建议临床应用所开发的放射学模型来指导胆管癌的免疫治疗。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A predictive radiotranscriptomics model based on DCE-MRI for tumor immune landscape and immunotherapy in cholangiocarcinoma.

This study aims to determine the predictive role of dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) derived radiomic model in tumor immune profiling and immunotherapy for cholangiocarcinoma. To perform radiomic analysis, immune related subgroup clustering was first performed by single sample gene set enrichment analysis (ssGSEA). Second, a total of 806 radiomic features for each phase of DCE-MRI were extracted by utilizing the Python package Pyradiomics. Then, a predictive radiomic signature model was constructed after a three-step features reduction and selection, and receiver operating characteristic (ROC) curve was employed to evaluate the performance of this model. In the end, an independent testing cohort involving cholangiocarcinoma patients with anti-PD-1 Sintilimab treatment after surgery was used to verify the potential application of the established radiomic model in immunotherapy for cholangiocarcinoma. Two distinct immune related subgroups were classified using ssGSEA based on transcriptome sequencing. For radiomic analysis, a total of 10 predictive radiomic features were finally identified to establish a radiomic signature model for immune landscape classification. Regarding to the predictive performance, the mean AUC of ROC curves was 0.80 in the training/validation cohort. For the independent testing cohort, the individual predictive probability by radiomic model and the corresponding immune score derived from ssGSEA was significantly correlated. In conclusion, radiomic signature model based on DCE-MRI was capable of predicting the immune landscape of chalangiocarcinoma. Consequently, a potentially clinical application of this developed radiomic model to guide immunotherapy for cholangiocarcinoma was suggested.

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来源期刊
CiteScore
13.60
自引率
1.80%
发文量
47
审稿时长
>12 weeks
期刊介绍: BioScience Trends (Print ISSN 1881-7815, Online ISSN 1881-7823) is an international peer-reviewed journal. BioScience Trends devotes to publishing the latest and most exciting advances in scientific research. Articles cover fields of life science such as biochemistry, molecular biology, clinical research, public health, medical care system, and social science in order to encourage cooperation and exchange among scientists and clinical researchers.
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