针对 BF.7 Omicron 变异 SARS-CoV-2 的多表位疫苗的计算设计

IF 1 Q4 GENETICS & HEREDITY
B. Raghavendra , T. Dhanushkumar , Prasanna Kumar Selvam , Mohanaraj Gopikrishnan , C. George Priya Doss. , Karthick Vasudevan
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引用次数: 0

摘要

近来,SARS-CoV-2 病毒因其适应宿主环境的高容许性变异而对世界造成严重威胁,这正是设计一种能产生免疫反应以对抗病毒的有效疫苗的时机。我们采用免疫信息学方法进行了高通量分析,旨在开发一种基于多表位的疫苗,专门针对 BF.7 Omicron 变种,该变种是目前令人担忧的变种。成功开发疫苗的关键在于确定 B 细胞和 T 细胞表位,这些表位既具有抗原性特征,能够引起防御性免疫反应,又具有非过敏性特征,可防止任何有害的过敏反应。这些表位对疫苗的开发至关重要,因为它们有助于免疫系统识别和攻击某些感染的能力,而不会诱发不利的过敏反应。对接和 MD 模拟研究表明,结构稳定性和 Toll 样受体与所选疫苗结构相互作用强烈。室内免疫模拟促进了这项研究,证实了疫苗接种的效率,它不仅可以针对特定的 VOC、BF.7 Omicron 变体,还可以针对其他 Omicron 亚系产生抗体,从而激发免疫反应。总之,计算研究为设计的疫苗结构提供了有力的证据,但还需要通过实验研究加以证实。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Computational design of a multi-epitope-based vaccine targeting the BF.7 Omicron variant of SARS-CoV-2

In recent times, the SARS-CoV-2 virus has been observed to cause a serious threat to the world through its high permissive mutations by adapting itself to the host environment, which is a time to design an effective vaccine that could be able to produce immune response to fight against the virus. An Immunoinformatics approach was employed to conduct a high-throughput analysis aimed at developing a multi-epitope-based vaccine that specifically targets the BF.7 Omicron variant, which is currently a variant of concern. The essential aspect for the successful development of a vaccine lies in identifying B-cell and T-cell epitopes that exhibit both antigenic features, capable of eliciting a defensive immune response, while also possessing non-allergenic characteristics to prevent any harmful allergic reactions. These epitopes are essential for the development of vaccines because they aid in the immune system's ability to identify and attack certain infections without inducing unfavorable allergic reactions. The Docking and MD simulation studies have shown structural stability and Toll-like receptors with chosen vaccine architecture interact strongly. The in-silico immune simulation boosted the research study confirming the efficiency of the vaccination that has the potential to stimulate immunological responses by producing antibodies to not only targeting the specific VOC, BF.7 Omicron variant but also other omicron sublineages. Overall, the computational study have provided strong evidences to the designed vaccine construct which needs to be confirmed through the experiemental study.

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来源期刊
Gene Reports
Gene Reports Biochemistry, Genetics and Molecular Biology-Genetics
CiteScore
3.30
自引率
7.70%
发文量
246
审稿时长
49 days
期刊介绍: Gene Reports publishes papers that focus on the regulation, expression, function and evolution of genes in all biological contexts, including all prokaryotic and eukaryotic organisms, as well as viruses. Gene Reports strives to be a very diverse journal and topics in all fields will be considered for publication. Although not limited to the following, some general topics include: DNA Organization, Replication & Evolution -Focus on genomic DNA (chromosomal organization, comparative genomics, DNA replication, DNA repair, mobile DNA, mitochondrial DNA, chloroplast DNA). Expression & Function - Focus on functional RNAs (microRNAs, tRNAs, rRNAs, mRNA splicing, alternative polyadenylation) Regulation - Focus on processes that mediate gene-read out (epigenetics, chromatin, histone code, transcription, translation, protein degradation). Cell Signaling - Focus on mechanisms that control information flow into the nucleus to control gene expression (kinase and phosphatase pathways controlled by extra-cellular ligands, Wnt, Notch, TGFbeta/BMPs, FGFs, IGFs etc.) Profiling of gene expression and genetic variation - Focus on high throughput approaches (e.g., DeepSeq, ChIP-Seq, Affymetrix microarrays, proteomics) that define gene regulatory circuitry, molecular pathways and protein/protein networks. Genetics - Focus on development in model organisms (e.g., mouse, frog, fruit fly, worm), human genetic variation, population genetics, as well as agricultural and veterinary genetics. Molecular Pathology & Regenerative Medicine - Focus on the deregulation of molecular processes in human diseases and mechanisms supporting regeneration of tissues through pluripotent or multipotent stem cells.
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