Tahinarizaka Jenny Rakotonirina , Erika Viljoen , Jean Michel Leong Pock Tsy , Tendro Radanielina
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In this research study, a total of 136 nuclear ribosomal internal transcribed spacer (nr<em>ITS</em>) DNA sequences representing 41 species of Malagasy <em>Dalbergia</em> were used to assess the effectiveness of the <em>ITS</em> barcode in species identification. Each sequence was evaluated by genetic distance and tree-based methods. Using clustering analyses, estimating genetic distances, and comparing sequences of 136 samples, we were able to distinguish species. The interspecific distance was greater than the intraspecific distance, but no barcoding gap was observed. It was found that <em>ITS</em> has a very high discriminatory power for Malagasy <em>Dalbergia</em> species using both NJ and TaxonDNA methods. Considering the \"Best Match\" and \"Best Close Match\" analyses, the discrimination powers of <em>ITS</em> were 98.54% and 93.40%, respectively. Our research indicates that the use of <em>ITS</em> as a barcode enables the identification of Malagasy <em>Dalbergia</em> species and contributes to completing the reference library for controlling the trade in precious woods. These results are essential to ensure effective enforcement of regulations and promote the long-term conservation of these species.</p></div>","PeriodicalId":93435,"journal":{"name":"Forensic science international. Animals and environments","volume":"5 ","pages":"Article 100089"},"PeriodicalIF":0.0000,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S266693742400009X/pdfft?md5=a1998603195e5301a9d9dfcf6d4a1025&pid=1-s2.0-S266693742400009X-main.pdf","citationCount":"0","resultStr":"{\"title\":\"Validation of ITS barcode for the identification of CITES Malagasy Dalbergia (Fabaceae) species\",\"authors\":\"Tahinarizaka Jenny Rakotonirina , Erika Viljoen , Jean Michel Leong Pock Tsy , Tendro Radanielina\",\"doi\":\"10.1016/j.fsiae.2024.100089\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>The precious Malagasy rosewood species of the genus <em>Dalbergia</em> have been listed in Appendix II of CITES due to illegal logging and timber trade. Accurate identification and proper delimitation are of paramount importance for endangered species regulated by CITES. One of the most accurate methods of identifying precious woods is DNA barcoding which is a technique for rapid and accurate species identification based on a short DNA sequence or a few DNA regions. Recent studies have shown that the <em>ITS</em> barcode can identify Malagasy <em>Dalbergia</em> species, but the number of species has been limited. In this research study, a total of 136 nuclear ribosomal internal transcribed spacer (nr<em>ITS</em>) DNA sequences representing 41 species of Malagasy <em>Dalbergia</em> were used to assess the effectiveness of the <em>ITS</em> barcode in species identification. Each sequence was evaluated by genetic distance and tree-based methods. Using clustering analyses, estimating genetic distances, and comparing sequences of 136 samples, we were able to distinguish species. The interspecific distance was greater than the intraspecific distance, but no barcoding gap was observed. It was found that <em>ITS</em> has a very high discriminatory power for Malagasy <em>Dalbergia</em> species using both NJ and TaxonDNA methods. Considering the \\\"Best Match\\\" and \\\"Best Close Match\\\" analyses, the discrimination powers of <em>ITS</em> were 98.54% and 93.40%, respectively. Our research indicates that the use of <em>ITS</em> as a barcode enables the identification of Malagasy <em>Dalbergia</em> species and contributes to completing the reference library for controlling the trade in precious woods. These results are essential to ensure effective enforcement of regulations and promote the long-term conservation of these species.</p></div>\",\"PeriodicalId\":93435,\"journal\":{\"name\":\"Forensic science international. 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引用次数: 0
摘要
由于非法砍伐和木材贸易,马达加斯加珍贵的花梨木属 Dalbergia 树种已被列入《濒危野生动植物种国际贸易公约》附录 II。对于受《濒危野生动植物种国际贸易公约》管制的濒危物种来说,准确的鉴定和适当的划界至关重要。鉴定珍贵木材最准确的方法之一是 DNA 条形码,这是一种根据短 DNA 序列或几个 DNA 区域快速准确鉴定物种的技术。最近的研究表明,ITS 条形码可以鉴定马达加斯加 Dalbergia 树种,但鉴定的树种数量有限。本研究共使用了 136 个核核糖体内部转录间隔(nrITS)DNA 序列,代表马达加斯加 Dalbergia 的 41 个物种,以评估 ITS 条形码在物种鉴定中的有效性。每个序列都通过遗传距离和基于树的方法进行了评估。通过聚类分析、估计遗传距离和比较 136 个样本的序列,我们能够区分物种。种间距离大于种内距离,但没有观察到条形码差距。研究发现,使用 NJ 和 TaxonDNA 方法,ITS 对马达加斯加 Dalbergia 物种具有很高的鉴别力。在 "最佳匹配 "和 "最佳近似匹配 "分析中,ITS 的鉴别力分别为 98.54% 和 93.40%。我们的研究表明,使用 ITS 作为条形码可以鉴定马达加斯加达尔伯里亚树种,有助于完善控制珍贵木材贸易的参考图书馆。这些成果对于确保有效执行法规和促进这些物种的长期保护至关重要。
Validation of ITS barcode for the identification of CITES Malagasy Dalbergia (Fabaceae) species
The precious Malagasy rosewood species of the genus Dalbergia have been listed in Appendix II of CITES due to illegal logging and timber trade. Accurate identification and proper delimitation are of paramount importance for endangered species regulated by CITES. One of the most accurate methods of identifying precious woods is DNA barcoding which is a technique for rapid and accurate species identification based on a short DNA sequence or a few DNA regions. Recent studies have shown that the ITS barcode can identify Malagasy Dalbergia species, but the number of species has been limited. In this research study, a total of 136 nuclear ribosomal internal transcribed spacer (nrITS) DNA sequences representing 41 species of Malagasy Dalbergia were used to assess the effectiveness of the ITS barcode in species identification. Each sequence was evaluated by genetic distance and tree-based methods. Using clustering analyses, estimating genetic distances, and comparing sequences of 136 samples, we were able to distinguish species. The interspecific distance was greater than the intraspecific distance, but no barcoding gap was observed. It was found that ITS has a very high discriminatory power for Malagasy Dalbergia species using both NJ and TaxonDNA methods. Considering the "Best Match" and "Best Close Match" analyses, the discrimination powers of ITS were 98.54% and 93.40%, respectively. Our research indicates that the use of ITS as a barcode enables the identification of Malagasy Dalbergia species and contributes to completing the reference library for controlling the trade in precious woods. These results are essential to ensure effective enforcement of regulations and promote the long-term conservation of these species.