痤疮丙酸杆菌(Cutibacterium (Propionibacterium) acnes)型菌株 ATCC6919 的完整基因组序列草案

H. Tang, Kaiwei Si, Xiao Zhang, Heling Zhu, Wenliang Zheng, Xibao Zhang, Jingyao Liang, J. Ruan
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摘要

目的:广泛使用抗生素治疗痤疮是产生耐药性痤疮丙酸杆菌的主要原因。然而,痤疮丙酸杆菌的完整基因序列参考文献尚未见报道。在此,我们报告了痤疮棒状杆菌(Cutibacterium acnes)型菌株 ATCC6919 的完整基因序列。方法使用 Illumina Hiseq4000 和 PacBio RSII 单分子实时测序平台对痤疮杆菌 ATCC6919 进行了全基因组测序。使用单分子实时分析 v.2.3.0 软件的 HGAP3 协议对生成的序列读数进行了从头组装。利用各种生物信息学工具对基因组草案进行注释和进一步分析。结果痤疮杆菌ATCC6919的基因组总长度为2,495,001bp(G+C含量为60.02%),共有2,450个编码序列,包括2,358个蛋白质、45个tRNA、9个rRNA和1个sRNA。抗生素耐药性综合数据库显示,在 ATCC6919 中发现的基因(thy A)与氨基水杨酸耐药性有关。抗菌药敏感性测试显示,该分离株对甲硝唑和磺胺甲噁唑不敏感,但对所有其他测试过的抗菌药(红霉素、阿奇霉素、克拉霉素、四环素、米诺环素、三甲氧苄啶、左氧氟沙星、头孢曲松和强力霉素)都敏感。结论本研究报告了痤疮棒状杆菌 ATCC6919 的完整基因组序列,为根据痤疮棒状杆菌的基因组特征和耐药基因多样性进行比较分析提供了有价值的参考。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Complete Draft Genome Sequence of Cutibacterium (Propionibacterium) acnes Type Strain ATCC6919
Objectives: The wide use of antibiotics for acne is the main cause of drug-resistantCutibacterium acnes. However, the complete genetic sequence reference of C. acnes has not yet been reported. Herein, we report the complete genetic sequence of Cutibacterium acnes type strain ATCC6919. Methods: Whole-genome sequencing of Cutibacterium acnes ATCC6919 was performed using both the Illumina Hiseq4000 and PacBio RSII single-molecule real-time sequencing platforms. The generated sequence reads were de novo assembled using the HGAP3 protocol of single-molecule real-time analysis v.2.3.0 software. The draft genome was annotated and further analyzed by various bioinformatics tools. Results: The total genome length of Cutibacterium acnes ATCC6919 was 2,495,001bp (60.02% G + C content), with 2,450 coding sequences including 2,358 proteins, 45 tRNAs, 9 rRNAs, and 1 sRNA. The Comprehensive Antibiotic Resistance Database showed that the gene (thy A) found in ATCC6919 was associated with resistance to aminosalicylic acid. Antimicrobial susceptibility testing showed that this isolate was not sensitive to metronidazole and sulfamethoxazole, but was sensitive to all other tested antimicrobials (erythromycin, azithromycin, clarithromycin, tetracycline, minocycline, trimethoprim, levofloxacin, ceftriaxone, and doxycycline). Conclusion: This study reports the complete genome sequence of Cutibacterium acnes ATCC6919, which provides a valuable reference for comparative analysis based on the genomic characteristics and resistance gene diversity of Cutibacterium acnes.
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