{"title":"网络结构指标可预测食物网的生态稳健性","authors":"Yi Tang, Fengzhen Wang, Wenhao Zhou","doi":"10.1111/1440-1703.12489","DOIUrl":null,"url":null,"abstract":"<p>Food web robustness is a critical aspect of ecosystem stability and has been extensively studied in ecology. However, the potential of machine learning techniques in predicting food web robustness and the identification of key network structure indicators have not been fully explored. We compared the suitability of different machine learning methods and assessed the relative importance of network structure indicators for predicting the robustness of food webs. We utilized a variety of food web datasets spanning different ecosystems to calculate network structure indicators, which include average distance (AD), betweenness centrality (BC), directional connectivity (C), closeness centrality (CC), diameter (D), degree centrality (DC), edge betweenness centrality (EBC), number of links (L), linkage density (LD), and number of nodes (N). We then compared the performance of machine learning methods, including artificial neural network (ANN), random forest (RF), least absolute shrinkage and selection operator (LASSO), and decision tree (DT), and evaluated the relative importance of network structure indicators on robustness predictions. The results demonstrate that the RF model has the best performance (MAE = 0.0178, RMSE = 0.0263, <i>R</i><sup>2</sup> = 0.9063). Meanwhile, the CC indicator has a significant impact in predicting robustness of food webs. It is suggested that both the RF model and the CC indicator should be considered seriously in predicting food web robustness. This research elucidates the differential outcomes when various machine learning methodologies and indicators are employed to predict the robustness of food webs. It significantly enhances our understanding by demonstrating the precise capability of machine learning models in forecasting the robustness of food webs.</p>","PeriodicalId":1,"journal":{"name":"Accounts of Chemical Research","volume":null,"pages":null},"PeriodicalIF":16.4000,"publicationDate":"2024-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Network structure indicators predict ecological robustness in food webs\",\"authors\":\"Yi Tang, Fengzhen Wang, Wenhao Zhou\",\"doi\":\"10.1111/1440-1703.12489\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>Food web robustness is a critical aspect of ecosystem stability and has been extensively studied in ecology. However, the potential of machine learning techniques in predicting food web robustness and the identification of key network structure indicators have not been fully explored. We compared the suitability of different machine learning methods and assessed the relative importance of network structure indicators for predicting the robustness of food webs. We utilized a variety of food web datasets spanning different ecosystems to calculate network structure indicators, which include average distance (AD), betweenness centrality (BC), directional connectivity (C), closeness centrality (CC), diameter (D), degree centrality (DC), edge betweenness centrality (EBC), number of links (L), linkage density (LD), and number of nodes (N). We then compared the performance of machine learning methods, including artificial neural network (ANN), random forest (RF), least absolute shrinkage and selection operator (LASSO), and decision tree (DT), and evaluated the relative importance of network structure indicators on robustness predictions. The results demonstrate that the RF model has the best performance (MAE = 0.0178, RMSE = 0.0263, <i>R</i><sup>2</sup> = 0.9063). Meanwhile, the CC indicator has a significant impact in predicting robustness of food webs. It is suggested that both the RF model and the CC indicator should be considered seriously in predicting food web robustness. This research elucidates the differential outcomes when various machine learning methodologies and indicators are employed to predict the robustness of food webs. It significantly enhances our understanding by demonstrating the precise capability of machine learning models in forecasting the robustness of food webs.</p>\",\"PeriodicalId\":1,\"journal\":{\"name\":\"Accounts of Chemical Research\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":16.4000,\"publicationDate\":\"2024-05-28\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Accounts of Chemical Research\",\"FirstCategoryId\":\"93\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1111/1440-1703.12489\",\"RegionNum\":1,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Accounts of Chemical Research","FirstCategoryId":"93","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1111/1440-1703.12489","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
Network structure indicators predict ecological robustness in food webs
Food web robustness is a critical aspect of ecosystem stability and has been extensively studied in ecology. However, the potential of machine learning techniques in predicting food web robustness and the identification of key network structure indicators have not been fully explored. We compared the suitability of different machine learning methods and assessed the relative importance of network structure indicators for predicting the robustness of food webs. We utilized a variety of food web datasets spanning different ecosystems to calculate network structure indicators, which include average distance (AD), betweenness centrality (BC), directional connectivity (C), closeness centrality (CC), diameter (D), degree centrality (DC), edge betweenness centrality (EBC), number of links (L), linkage density (LD), and number of nodes (N). We then compared the performance of machine learning methods, including artificial neural network (ANN), random forest (RF), least absolute shrinkage and selection operator (LASSO), and decision tree (DT), and evaluated the relative importance of network structure indicators on robustness predictions. The results demonstrate that the RF model has the best performance (MAE = 0.0178, RMSE = 0.0263, R2 = 0.9063). Meanwhile, the CC indicator has a significant impact in predicting robustness of food webs. It is suggested that both the RF model and the CC indicator should be considered seriously in predicting food web robustness. This research elucidates the differential outcomes when various machine learning methodologies and indicators are employed to predict the robustness of food webs. It significantly enhances our understanding by demonstrating the precise capability of machine learning models in forecasting the robustness of food webs.
期刊介绍:
Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance.
Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.