利用蒸发干燥、广义相加模型和 K-means 聚类技术识别液晶-蛋白质液滴的纹理。

IF 1.8 4区 物理与天体物理 Q4 CHEMISTRY, PHYSICAL
Anusuya Pal, Amalesh Gope
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引用次数: 0

摘要

无梗干燥液滴表现出独特的形态模式,包括不同的系统,即 DNA、蛋白质、血液和蛋白质-液晶 (LC) 复合物。本研究采用了一种综合方法,将干燥液滴、图像纹理分析(一阶统计特征、灰度级共现矩阵、灰度级运行长度矩阵、灰度级大小区矩阵和灰度级依赖性矩阵)和统计数据分析(广义相加模型和 K-means 聚类)结合起来。在交叉偏振配置的光学显微镜下,它对干燥过程中不同磷酸盐缓冲液初始浓度(0x、0.25x、0.5x、0.75x 和 1x)下的液相色谱-蛋白质液滴进行了全面的定性和定量研究。值得注意的是,它揭示了 LC 蛋白在初始、中期和最终三个干燥阶段的不同质地。广义相加模型(GAM)显示,所有特征都对区分 LC 蛋白液滴有显著作用。将 K-means 聚类方法与 GAM 分析相结合,可以阐明与整个干燥过程相比,质地在三个干燥阶段是如何演变的。值得注意的是,最后干燥阶段的纹理突出,具有定义明确、不重叠的聚类,支持对独特液相色谱纹理的直观观察。此外,本文还提供了宝贵的见解,展示了干燥液滴作为表征和分类动态液相色谱纹理的快速、直接工具的功效。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Texture identification in liquid crystal-protein droplets using evaporative drying, generalized additive modeling, and K-means Clustering

Texture identification in liquid crystal-protein droplets using evaporative drying, generalized additive modeling, and K-means Clustering

Sessile drying droplets manifest distinct morphological patterns, encompassing diverse systems, viz., DNA, proteins, blood, and protein-liquid crystal (LC) complexes. This study employs an integrated methodology that combines drying droplet, image texture analysis (features from First Order Statistics, Gray Level Co-occurrence Matrix, Gray Level Run Length Matrix, Gray Level Size Zone Matrix, and Gray Level Dependence Matrix), and statistical data analysis (Generalized Additive Modeling and K-means clustering). It provides a comprehensive qualitative and quantitative exploration by examining LC-protein droplets at varying initial phosphate buffered concentrations (0x, 0.25x, 0.5x, 0.75x, and 1x) during the drying process under optical microscopy with crossed polarizing configuration. Notably, it unveils distinct LC-protein textures across three drying stages: initial, middle, and final. The Generalized Additive Modeling (GAM) reveals that all the features significantly contribute to differentiating LC-protein droplets. Integrating the K-means clustering method with GAM analysis elucidates how textures evolve through the three drying stages compared to the entire drying process. Notably, the final drying stage stands out with well-defined, non-overlapping clusters, supporting the visual observations of unique LC textures. Furthermore, this paper contributes valuable insights, showcasing the efficacy of drying droplets as a rapid and straightforward tool for characterizing and classifying dynamic LC textures.

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来源期刊
The European Physical Journal E
The European Physical Journal E CHEMISTRY, PHYSICAL-MATERIALS SCIENCE, MULTIDISCIPLINARY
CiteScore
2.60
自引率
5.60%
发文量
92
审稿时长
3 months
期刊介绍: EPJ E publishes papers describing advances in the understanding of physical aspects of Soft, Liquid and Living Systems. Soft matter is a generic term for a large group of condensed, often heterogeneous systems -- often also called complex fluids -- that display a large response to weak external perturbations and that possess properties governed by slow internal dynamics. Flowing matter refers to all systems that can actually flow, from simple to multiphase liquids, from foams to granular matter. Living matter concerns the new physics that emerges from novel insights into the properties and behaviours of living systems. Furthermore, it aims at developing new concepts and quantitative approaches for the study of biological phenomena. Approaches from soft matter physics and statistical physics play a key role in this research. The journal includes reports of experimental, computational and theoretical studies and appeals to the broad interdisciplinary communities including physics, chemistry, biology, mathematics and materials science.
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