利用自适应群套索为高维神经网络电位进行特征选择

IF 6.3 2区 物理与天体物理 Q1 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE
Johannes Sandberg, Thomas Voigtmann, Emilie Devijver and Noel Jakse
{"title":"利用自适应群套索为高维神经网络电位进行特征选择","authors":"Johannes Sandberg, Thomas Voigtmann, Emilie Devijver and Noel Jakse","doi":"10.1088/2632-2153/ad450e","DOIUrl":null,"url":null,"abstract":"Neural network potentials are a powerful tool for atomistic simulations, allowing to accurately reproduce ab initio potential energy surfaces with computational performance approaching classical force fields. A central component of such potentials is the transformation of atomic positions into a set of atomic features in a most efficient and informative way. In this work, a feature selection method is introduced for high dimensional neural network potentials, based on the adaptive group lasso (AGL) approach. It is shown that the use of an embedded method, taking into account the interplay between features and their action in the estimator, is necessary to optimize the number of features. The method’s efficiency is tested on three different monoatomic systems, including Lennard–Jones as a simple test case, Aluminium as a system characterized by predominantly radial interactions, and Boron as representative of a system with strongly directional components in the interactions. The AGL is compared with unsupervised filter methods and found to perform consistently better in reducing the number of features needed to reproduce the reference simulation data at a similar level of accuracy as the starting feature set. In particular, our results show the importance of taking into account model predictions in feature selection for interatomic potentials.","PeriodicalId":33757,"journal":{"name":"Machine Learning Science and Technology","volume":"51 1","pages":""},"PeriodicalIF":6.3000,"publicationDate":"2024-05-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Feature selection for high-dimensional neural network potentials with the adaptive group lasso\",\"authors\":\"Johannes Sandberg, Thomas Voigtmann, Emilie Devijver and Noel Jakse\",\"doi\":\"10.1088/2632-2153/ad450e\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Neural network potentials are a powerful tool for atomistic simulations, allowing to accurately reproduce ab initio potential energy surfaces with computational performance approaching classical force fields. A central component of such potentials is the transformation of atomic positions into a set of atomic features in a most efficient and informative way. In this work, a feature selection method is introduced for high dimensional neural network potentials, based on the adaptive group lasso (AGL) approach. It is shown that the use of an embedded method, taking into account the interplay between features and their action in the estimator, is necessary to optimize the number of features. The method’s efficiency is tested on three different monoatomic systems, including Lennard–Jones as a simple test case, Aluminium as a system characterized by predominantly radial interactions, and Boron as representative of a system with strongly directional components in the interactions. The AGL is compared with unsupervised filter methods and found to perform consistently better in reducing the number of features needed to reproduce the reference simulation data at a similar level of accuracy as the starting feature set. In particular, our results show the importance of taking into account model predictions in feature selection for interatomic potentials.\",\"PeriodicalId\":33757,\"journal\":{\"name\":\"Machine Learning Science and Technology\",\"volume\":\"51 1\",\"pages\":\"\"},\"PeriodicalIF\":6.3000,\"publicationDate\":\"2024-05-16\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Machine Learning Science and Technology\",\"FirstCategoryId\":\"101\",\"ListUrlMain\":\"https://doi.org/10.1088/2632-2153/ad450e\",\"RegionNum\":2,\"RegionCategory\":\"物理与天体物理\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Machine Learning Science and Technology","FirstCategoryId":"101","ListUrlMain":"https://doi.org/10.1088/2632-2153/ad450e","RegionNum":2,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE","Score":null,"Total":0}
引用次数: 0

摘要

神经网络势能是原子模拟的强大工具,可以精确再现原子势能面,计算性能接近经典力场。这类势能的一个核心组成部分是以最有效、信息量最大的方式将原子位置转换成一组原子特征。在这项工作中,基于自适应群套索(AGL)方法,为高维神经网络势能引入了一种特征选择方法。研究表明,考虑到特征之间的相互作用及其在估计器中的作用,有必要使用嵌入式方法来优化特征数量。该方法的效率在三个不同的单原子系统上进行了测试,包括作为简单测试案例的伦纳德-琼斯系统、主要以径向相互作用为特征的铝系统,以及代表相互作用具有强烈方向性成分的硼系统。我们将 AGL 与无监督滤波方法进行了比较,结果发现 AGL 在减少重现参考模拟数据所需的特征数量方面一直表现较好,其准确度与起始特征集的准确度相当。特别是,我们的结果表明了在原子间电位的特征选择中考虑模型预测的重要性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Feature selection for high-dimensional neural network potentials with the adaptive group lasso
Neural network potentials are a powerful tool for atomistic simulations, allowing to accurately reproduce ab initio potential energy surfaces with computational performance approaching classical force fields. A central component of such potentials is the transformation of atomic positions into a set of atomic features in a most efficient and informative way. In this work, a feature selection method is introduced for high dimensional neural network potentials, based on the adaptive group lasso (AGL) approach. It is shown that the use of an embedded method, taking into account the interplay between features and their action in the estimator, is necessary to optimize the number of features. The method’s efficiency is tested on three different monoatomic systems, including Lennard–Jones as a simple test case, Aluminium as a system characterized by predominantly radial interactions, and Boron as representative of a system with strongly directional components in the interactions. The AGL is compared with unsupervised filter methods and found to perform consistently better in reducing the number of features needed to reproduce the reference simulation data at a similar level of accuracy as the starting feature set. In particular, our results show the importance of taking into account model predictions in feature selection for interatomic potentials.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Machine Learning Science and Technology
Machine Learning Science and Technology Computer Science-Artificial Intelligence
CiteScore
9.10
自引率
4.40%
发文量
86
审稿时长
5 weeks
期刊介绍: Machine Learning Science and Technology is a multidisciplinary open access journal that bridges the application of machine learning across the sciences with advances in machine learning methods and theory as motivated by physical insights. Specifically, articles must fall into one of the following categories: advance the state of machine learning-driven applications in the sciences or make conceptual, methodological or theoretical advances in machine learning with applications to, inspiration from, or motivated by scientific problems.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信