2022 年从北卡罗来纳州芝麻中分离出的 Pseudomonas amygdali pv. sesami 和 Xanthomonas arboricola 的全基因组序列资源

Katherine M. D'Amico-Willman, Kimberly M Montalban, Prasanna Joglekar, Izabela Moura Duin, David F. Ritchie, J. Fagen, Alejandra I Huerta
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引用次数: 0

摘要

芝麻(Sesamum indicum)是一种特产,作为美国农业系统的替代轮作作物,人们对它的兴趣与日俱增。这种作物易感染多种病原体,包括假单胞菌和黄单胞菌。最近从北卡罗来纳州的芝麻中培养出了两种细菌分离物,症状为细菌性斑点病,并被鉴定为 Pseudomonas amygdali pv. sesami (Pas) 和 Xanthomonas sp.,这些分离物被用于利用 Illumina 和 PacBio 进行杂交全基因组测序和组装,以开发这些致病菌株的强大基因组资源。结果提供了最完整的 Pas 基因组,并将黄单胞菌 sp.需要改进芝麻病原体的基因组资源,以准确检测、描述和及时处理该疾病。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Whole genome sequence resources for Pseudomonas amygdali pv. sesami and Xanthomonas arboricola isolated from sesame (Sesamum indicum) in North Carolina in 2022
Sesame (Sesamum indicum) is a specialty with increasing interest as an alternative, rotational crop for US agricultural systems. This crop is susceptible to several pathogens, including Pseudomonas and Xanthomonas species. Two bacterial isolates were recently cultured from sesame in North Carolina symptomatic of bacterial spot and identified as Pseudomonas amygdali pv. sesami (Pas) and Xanthomonas sp. These isolates were used for hybrid whole genome sequencing and assembly using Illumina and PacBio to develop robust genomic resources for these disease-causing strains. The results provide the most complete Pas genome available and placed the Xanthomoas sp. isolate into the X. arboricola species designation. Improved genomic resources for pathogens of sesame are needed to accurately detect, characterize, and employ timely management of the disease.
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