用于识别引起脑膜炎的三种重要细菌的新型生物传感策略

IF 1.7 4区 生物学 Q4 BIOCHEMICAL RESEARCH METHODS
Azam Yaghoobi , Ramin Abiri , Amirhoushang Alvandi , Iraj Manouchehri , Elham Arkan , Ali R. Jalalvand
{"title":"用于识别引起脑膜炎的三种重要细菌的新型生物传感策略","authors":"Azam Yaghoobi ,&nbsp;Ramin Abiri ,&nbsp;Amirhoushang Alvandi ,&nbsp;Iraj Manouchehri ,&nbsp;Elham Arkan ,&nbsp;Ali R. Jalalvand","doi":"10.1016/j.mimet.2024.106954","DOIUrl":null,"url":null,"abstract":"<div><p>Bacterial meningitis is an acute infection which requires rapid diagnosis and treatment due to the high mortality and serious consequences of the disease. The purpose of this study was to design a homemade multiplex PCR and a novel fluorescence biosensor on chip (FBC) to detect three important agents of meningitis including <em>Streptococcus pneumoniae (S. pneumoniae)</em>, <em>Neisseria meningitidis (N. meningitidis),</em> and <em>Haemophilus influenzae (H. influenzae)</em>. The homemade multiplex PCR can diagnose three bacterial species simultaneously. Fabrication of FBC was carried out based on the deposition of lead nanoparticles on a quartz slide using the thermal evaporation method. Then, the SH-Cap Probe/Target ssDNA /FAM-Rep probe was loaded on lead film. The evaluation of the fluorescence reaction when the probes bind to the target ssDNA was assessed by a Cytation 5 Cell Imaging Multimode Reader Bio-Tek. The limit of detections (LOD) in homemade PCR and FBC to identify <em>S. pneumoniae</em> were 119 × 10<sup>2</sup> CFU/mL (0.27 ng/μL) and 380 CFU/mL (9 pg/μL), respectively. The LODs of homemade PCR and FBC for detection of <em>N. meningitidis</em> were 4.49 CFU/mL (1.1 pg/μL) and 13 × 10<sup>3</sup> CFU/mL (30 pg/μL), respectively. Our results confirmed the LODs of homemade PCR and FBC in detection of <em>H. influenzae</em> were 15.1 CFU/mL (30 fg/μL) and 41 × 10<sup>2</sup> CFU/mL (90 pg/ μL), respectively. Both techniques had appropriate sensitivity and specificity in detection of <em>S. pneumoniae</em>, <em>N. meningitidis</em> and <em>H. influenzae</em>.</p></div>","PeriodicalId":16409,"journal":{"name":"Journal of microbiological methods","volume":"222 ","pages":"Article 106954"},"PeriodicalIF":1.7000,"publicationDate":"2024-05-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"A novel biosensing strategy for identification of three important bacteria causing meningitis\",\"authors\":\"Azam Yaghoobi ,&nbsp;Ramin Abiri ,&nbsp;Amirhoushang Alvandi ,&nbsp;Iraj Manouchehri ,&nbsp;Elham Arkan ,&nbsp;Ali R. Jalalvand\",\"doi\":\"10.1016/j.mimet.2024.106954\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Bacterial meningitis is an acute infection which requires rapid diagnosis and treatment due to the high mortality and serious consequences of the disease. The purpose of this study was to design a homemade multiplex PCR and a novel fluorescence biosensor on chip (FBC) to detect three important agents of meningitis including <em>Streptococcus pneumoniae (S. pneumoniae)</em>, <em>Neisseria meningitidis (N. meningitidis),</em> and <em>Haemophilus influenzae (H. influenzae)</em>. The homemade multiplex PCR can diagnose three bacterial species simultaneously. Fabrication of FBC was carried out based on the deposition of lead nanoparticles on a quartz slide using the thermal evaporation method. Then, the SH-Cap Probe/Target ssDNA /FAM-Rep probe was loaded on lead film. The evaluation of the fluorescence reaction when the probes bind to the target ssDNA was assessed by a Cytation 5 Cell Imaging Multimode Reader Bio-Tek. The limit of detections (LOD) in homemade PCR and FBC to identify <em>S. pneumoniae</em> were 119 × 10<sup>2</sup> CFU/mL (0.27 ng/μL) and 380 CFU/mL (9 pg/μL), respectively. The LODs of homemade PCR and FBC for detection of <em>N. meningitidis</em> were 4.49 CFU/mL (1.1 pg/μL) and 13 × 10<sup>3</sup> CFU/mL (30 pg/μL), respectively. Our results confirmed the LODs of homemade PCR and FBC in detection of <em>H. influenzae</em> were 15.1 CFU/mL (30 fg/μL) and 41 × 10<sup>2</sup> CFU/mL (90 pg/ μL), respectively. Both techniques had appropriate sensitivity and specificity in detection of <em>S. pneumoniae</em>, <em>N. meningitidis</em> and <em>H. influenzae</em>.</p></div>\",\"PeriodicalId\":16409,\"journal\":{\"name\":\"Journal of microbiological methods\",\"volume\":\"222 \",\"pages\":\"Article 106954\"},\"PeriodicalIF\":1.7000,\"publicationDate\":\"2024-05-15\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of microbiological methods\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0167701224000666\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"BIOCHEMICAL RESEARCH METHODS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of microbiological methods","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0167701224000666","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0

摘要

细菌性脑膜炎是一种急性传染病,死亡率高,后果严重,因此需要快速诊断和治疗。本研究的目的是设计一种自制的多重 PCR 和新型芯片荧光生物传感器(FBC),以检测三种重要的脑膜炎病原体,包括肺炎链球菌(S. pneumoniae)、脑膜炎奈瑟菌(N. meningitidis)和流感嗜血杆菌(H. influenzae)。自制的多重 PCR 可同时诊断三种细菌。FBC 的制作基于热蒸发法在石英载玻片上沉积纳米铅颗粒。然后,将 SH-Cap Probe/Target ssDNA /FAM-Rep 探针装载到铅膜上。探针与目标 ssDNA 结合时的荧光反应由 Cytation 5 细胞成像多模阅读器 Bio-Tek 进行评估。自制 PCR 和 FBC 鉴定肺炎双球菌的检测限(LOD)分别为 119 × 102 CFU/mL(0.27 ng/μL)和 380 CFU/mL(9 pg/μL)。自制 PCR 和 FBC 检测脑膜炎双球菌的 LOD 分别为 4.49 CFU/mL(1.1 pg/μL)和 13 × 103 CFU/mL(30 pg/μL)。我们的结果证实,自制 PCR 和 FBC 检测流感嗜血杆菌的 LOD 分别为 15.1 CFU/mL(30 fg/μL)和 41 × 102 CFU/mL(90 pg/μL)。这两种技术在检测肺炎双球菌、脑膜炎双球菌和流感嗜血杆菌方面都具有适当的灵敏度和特异性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

A novel biosensing strategy for identification of three important bacteria causing meningitis

A novel biosensing strategy for identification of three important bacteria causing meningitis

Bacterial meningitis is an acute infection which requires rapid diagnosis and treatment due to the high mortality and serious consequences of the disease. The purpose of this study was to design a homemade multiplex PCR and a novel fluorescence biosensor on chip (FBC) to detect three important agents of meningitis including Streptococcus pneumoniae (S. pneumoniae), Neisseria meningitidis (N. meningitidis), and Haemophilus influenzae (H. influenzae). The homemade multiplex PCR can diagnose three bacterial species simultaneously. Fabrication of FBC was carried out based on the deposition of lead nanoparticles on a quartz slide using the thermal evaporation method. Then, the SH-Cap Probe/Target ssDNA /FAM-Rep probe was loaded on lead film. The evaluation of the fluorescence reaction when the probes bind to the target ssDNA was assessed by a Cytation 5 Cell Imaging Multimode Reader Bio-Tek. The limit of detections (LOD) in homemade PCR and FBC to identify S. pneumoniae were 119 × 102 CFU/mL (0.27 ng/μL) and 380 CFU/mL (9 pg/μL), respectively. The LODs of homemade PCR and FBC for detection of N. meningitidis were 4.49 CFU/mL (1.1 pg/μL) and 13 × 103 CFU/mL (30 pg/μL), respectively. Our results confirmed the LODs of homemade PCR and FBC in detection of H. influenzae were 15.1 CFU/mL (30 fg/μL) and 41 × 102 CFU/mL (90 pg/ μL), respectively. Both techniques had appropriate sensitivity and specificity in detection of S. pneumoniae, N. meningitidis and H. influenzae.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Journal of microbiological methods
Journal of microbiological methods 生物-生化研究方法
CiteScore
4.30
自引率
4.50%
发文量
151
审稿时长
29 days
期刊介绍: The Journal of Microbiological Methods publishes scholarly and original articles, notes and review articles. These articles must include novel and/or state-of-the-art methods, or significant improvements to existing methods. Novel and innovative applications of current methods that are validated and useful will also be published. JMM strives for scholarship, innovation and excellence. This demands scientific rigour, the best available methods and technologies, correctly replicated experiments/tests, the inclusion of proper controls, calibrations, and the correct statistical analysis. The presentation of the data must support the interpretation of the method/approach. All aspects of microbiology are covered, except virology. These include agricultural microbiology, applied and environmental microbiology, bioassays, bioinformatics, biotechnology, biochemical microbiology, clinical microbiology, diagnostics, food monitoring and quality control microbiology, microbial genetics and genomics, geomicrobiology, microbiome methods regardless of habitat, high through-put sequencing methods and analysis, microbial pathogenesis and host responses, metabolomics, metagenomics, metaproteomics, microbial ecology and diversity, microbial physiology, microbial ultra-structure, microscopic and imaging methods, molecular microbiology, mycology, novel mathematical microbiology and modelling, parasitology, plant-microbe interactions, protein markers/profiles, proteomics, pyrosequencing, public health microbiology, radioisotopes applied to microbiology, robotics applied to microbiological methods,rumen microbiology, microbiological methods for space missions and extreme environments, sampling methods and samplers, soil and sediment microbiology, transcriptomics, veterinary microbiology, sero-diagnostics and typing/identification.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信