比较暴露于四种不同作用模式化学品的黑头鲦鱼幼体的转录组出发点与顶端效应浓度。

IF 3.7 4区 环境科学与生态学 Q2 ENVIRONMENTAL SCIENCES
Kevin Flynn, Michelle Le, Monique Hazemi, Adam Biales, David C. Bencic, Brett R. Blackwell, Kendra Bush, Robert Flick, John X. Hoang, John Martinson, Mackenzie Morshead, Kelvin Santana Rodriguez, Emma Stacy, Daniel L. Villeneuve
{"title":"比较暴露于四种不同作用模式化学品的黑头鲦鱼幼体的转录组出发点与顶端效应浓度。","authors":"Kevin Flynn,&nbsp;Michelle Le,&nbsp;Monique Hazemi,&nbsp;Adam Biales,&nbsp;David C. Bencic,&nbsp;Brett R. Blackwell,&nbsp;Kendra Bush,&nbsp;Robert Flick,&nbsp;John X. Hoang,&nbsp;John Martinson,&nbsp;Mackenzie Morshead,&nbsp;Kelvin Santana Rodriguez,&nbsp;Emma Stacy,&nbsp;Daniel L. Villeneuve","doi":"10.1007/s00244-024-01064-y","DOIUrl":null,"url":null,"abstract":"<div><p>It is postulated that below a transcriptomic-based point of departure, adverse effects are unlikely to occur, thereby providing a chemical concentration to use in screening level hazard assessment. The present study extends previous work describing a high-throughput fathead minnow assay that can provide full transcriptomic data after exposure to a test chemical. One-day post-hatch fathead minnows were exposed to ten concentrations of three representatives of four chemical modes of action: organophosphates, ecdysone receptor agonists, plant photosystem II inhibitors, and estrogen receptor agonists for 24 h. Concentration response modeling was performed on whole body gene expression data from each exposure, using measured chemical concentrations when available. Transcriptomic points of departure in larval fathead minnow were lower than apical effect concentrations across fish species but not always lower than toxic effect concentrations in other aquatic taxa like crustaceans and insects. The point of departure was highly dependent on measured chemical concentration which were often lower than the nominal concentration. Differentially expressed genes between chemicals within modes of action were compared and often showed statistically significant overlap. In addition, reproducibility between identical exposures using a positive control chemical (CuSO<sub>4</sub>) and variability associated with the transcriptomic point of departure using <i>in silico</i> sampling were considered. Results extend a transcriptomic-compatible fathead minnow high-throughput assay for possible use in ecological hazard screening.</p></div>","PeriodicalId":8377,"journal":{"name":"Archives of Environmental Contamination and Toxicology","volume":null,"pages":null},"PeriodicalIF":3.7000,"publicationDate":"2024-05-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Comparing Transcriptomic Points of Departure to Apical Effect Concentrations For Larval Fathead Minnow Exposed to Chemicals with Four Different Modes Of Action\",\"authors\":\"Kevin Flynn,&nbsp;Michelle Le,&nbsp;Monique Hazemi,&nbsp;Adam Biales,&nbsp;David C. Bencic,&nbsp;Brett R. Blackwell,&nbsp;Kendra Bush,&nbsp;Robert Flick,&nbsp;John X. Hoang,&nbsp;John Martinson,&nbsp;Mackenzie Morshead,&nbsp;Kelvin Santana Rodriguez,&nbsp;Emma Stacy,&nbsp;Daniel L. Villeneuve\",\"doi\":\"10.1007/s00244-024-01064-y\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>It is postulated that below a transcriptomic-based point of departure, adverse effects are unlikely to occur, thereby providing a chemical concentration to use in screening level hazard assessment. The present study extends previous work describing a high-throughput fathead minnow assay that can provide full transcriptomic data after exposure to a test chemical. One-day post-hatch fathead minnows were exposed to ten concentrations of three representatives of four chemical modes of action: organophosphates, ecdysone receptor agonists, plant photosystem II inhibitors, and estrogen receptor agonists for 24 h. Concentration response modeling was performed on whole body gene expression data from each exposure, using measured chemical concentrations when available. Transcriptomic points of departure in larval fathead minnow were lower than apical effect concentrations across fish species but not always lower than toxic effect concentrations in other aquatic taxa like crustaceans and insects. The point of departure was highly dependent on measured chemical concentration which were often lower than the nominal concentration. Differentially expressed genes between chemicals within modes of action were compared and often showed statistically significant overlap. In addition, reproducibility between identical exposures using a positive control chemical (CuSO<sub>4</sub>) and variability associated with the transcriptomic point of departure using <i>in silico</i> sampling were considered. Results extend a transcriptomic-compatible fathead minnow high-throughput assay for possible use in ecological hazard screening.</p></div>\",\"PeriodicalId\":8377,\"journal\":{\"name\":\"Archives of Environmental Contamination and Toxicology\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":3.7000,\"publicationDate\":\"2024-05-14\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Archives of Environmental Contamination and Toxicology\",\"FirstCategoryId\":\"93\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s00244-024-01064-y\",\"RegionNum\":4,\"RegionCategory\":\"环境科学与生态学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"ENVIRONMENTAL SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Archives of Environmental Contamination and Toxicology","FirstCategoryId":"93","ListUrlMain":"https://link.springer.com/article/10.1007/s00244-024-01064-y","RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"ENVIRONMENTAL SCIENCES","Score":null,"Total":0}
引用次数: 0

摘要

据推测,低于以转录组为基础的起始点,就不太可能出现不良影响,从而提供了用于筛选级危害评估的化学浓度。本研究扩展了之前的工作,描述了一种高通量黑头鲦鱼检测方法,该方法可在暴露于测试化学品后提供完整的转录组数据。将孵化后一天的黑头鲦鱼暴露于四种化学作用模式的三种代表物质(有机磷、蜕皮激素受体激动剂、植物光合系统 II 抑制剂和雌激素受体激动剂)的十种浓度下 24 小时。在所有鱼类物种中,黑头鲦幼体的转录组出发点均低于顶端效应浓度,但并不总是低于甲壳类和昆虫等其他水生类群的毒性效应浓度。出发点在很大程度上取决于测量到的化学物质浓度,这些浓度通常低于标称浓度。对不同作用模式的化学品之间的差异表达基因进行了比较,结果往往显示出统计学上的显著重叠。此外,还考虑了使用阳性对照化学物(CuSO4)在相同暴露条件下的重现性,以及使用硅学取样与转录组出发点相关的变异性。研究结果扩展了与转录组兼容的黑头鲦鱼高通量检测方法,可用于生态危害筛选。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Comparing Transcriptomic Points of Departure to Apical Effect Concentrations For Larval Fathead Minnow Exposed to Chemicals with Four Different Modes Of Action

Comparing Transcriptomic Points of Departure to Apical Effect Concentrations For Larval Fathead Minnow Exposed to Chemicals with Four Different Modes Of Action

It is postulated that below a transcriptomic-based point of departure, adverse effects are unlikely to occur, thereby providing a chemical concentration to use in screening level hazard assessment. The present study extends previous work describing a high-throughput fathead minnow assay that can provide full transcriptomic data after exposure to a test chemical. One-day post-hatch fathead minnows were exposed to ten concentrations of three representatives of four chemical modes of action: organophosphates, ecdysone receptor agonists, plant photosystem II inhibitors, and estrogen receptor agonists for 24 h. Concentration response modeling was performed on whole body gene expression data from each exposure, using measured chemical concentrations when available. Transcriptomic points of departure in larval fathead minnow were lower than apical effect concentrations across fish species but not always lower than toxic effect concentrations in other aquatic taxa like crustaceans and insects. The point of departure was highly dependent on measured chemical concentration which were often lower than the nominal concentration. Differentially expressed genes between chemicals within modes of action were compared and often showed statistically significant overlap. In addition, reproducibility between identical exposures using a positive control chemical (CuSO4) and variability associated with the transcriptomic point of departure using in silico sampling were considered. Results extend a transcriptomic-compatible fathead minnow high-throughput assay for possible use in ecological hazard screening.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
7.00
自引率
2.50%
发文量
63
审稿时长
8-16 weeks
期刊介绍: Archives of Environmental Contamination and Toxicology provides a place for the publication of timely, detailed, and definitive scientific studies pertaining to the source, transport, fate and / or effects of contaminants in the environment. The journal will consider submissions dealing with new analytical and toxicological techniques that advance our understanding of the source, transport, fate and / or effects of contaminants in the environment. AECT will now consider mini-reviews (where length including references is less than 5,000 words), which highlight case studies, a geographic topic of interest, or a timely subject of debate. AECT will also consider Special Issues on subjects of broad interest. The journal strongly encourages authors to ensure that their submission places a strong emphasis on ecosystem processes; submissions limited to technical aspects of such areas as toxicity testing for single chemicals, wastewater effluent characterization, human occupation exposure, or agricultural phytotoxicity are unlikely to be considered.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信