基于soxB基因测序的中国东北五大连池火山群地表水硫氧化细菌多样性高于泉水。

IF 2.3 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
International Microbiology Pub Date : 2025-01-01 Epub Date: 2024-05-14 DOI:10.1007/s10123-024-00526-6
Lirong Geng, Lei Yang, Tao Liu, Shuang Zhang, Xindi Sun, Weidong Wang, Hong Pan, Lei Yan
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引用次数: 0

摘要

简介:硫氧化细菌(SOB)在硫的生物地球化学循环中发挥着关键作用:硫氧化细菌(SOB)在硫的生物地球化学循环中发挥着关键作用:方法:通过高通量测序分析样品中的微生物群落:方法:本研究通过对 soxB 基因进行高通量测序,分析样本中的微生物群落。测量理化参数,并使用 QIIME 2(v2019.4)、R、Vsearch、MEGA7 和 Mothur 处理数据。阿尔法多样性指数和 UPGMA 聚类评估了群落差异,而热图则直观显示了样本内的变化。Canoco 5.0 分析了群落与环境的相关性,NMDS、Adonis 和 PcoA 探索了样本的差异性和环境因素的相关性。SPSS v.18.0 对统计显著性进行了检验:地表水中 SOB 的多样性高于泉水(超过 7.27 倍)。我们在这些湖泊和泉水中检测到了隶属于β-蛋白质细菌(72.3%)、α-蛋白质细菌(22.8%)和γ-蛋白质细菌(4.2%)的 SOB,它们广泛分布于这些湖泊和泉水中。Rhodoferax 和 Cupriavidus 在所有水样中出现频率最高,而 Rhodoferax 和 Bradyrhizobium 在地表水中占优势,但在泉水中很少见。两种生境中的 SOB 属呈正相关。共现分析确定 Bradyrhizobium、Blastochloris、Methylibium 和 Metyhlobacterium 为潜在的关键分类群。冗余分析(RDA)显示,所有水样中的 SOB 多样性与总碳(TC)、Fe2+ 和总氮(TN)呈正相关:明确了五大连池火山群火山湖和泉水中SOB的多样性和群落结构。此外,随着水域开放程度的变化,从开放湖泊到半封闭湖泊和封闭湖泊,SOB 的多样性和丰度均有所下降。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Higher diversity of sulfur-oxidizing bacteria based on soxB gene sequencing in surface water than in spring in Wudalianchi volcanic group, NE China.

Higher diversity of sulfur-oxidizing bacteria based on soxB gene sequencing in surface water than in spring in Wudalianchi volcanic group, NE China.

Introduction: Sulfur-oxidizing bacteria (SOB) play a key role in the biogeochemical cycling of sulfur.

Objectives: To explore SOB diversity, distribution, and physicochemical drivers in five volcanic lakes and two springs in the Wudalianchi volcanic field, China.

Methods: This study analyzed microbial communities in samples via high-throughput sequencing of the soxB gene. Physical-chemical parameters were measured, and QIIME 2 (v2019.4), R, Vsearch, MEGA7, and Mothur processed the data. Alpha diversity indices and UPGMA clustering assessed community differences, while heat maps visualized intra-sample variations. Canoco 5.0 analyzed community-environment correlations, and NMDS, Adonis, and PcoA explored sample dissimilarities and environmental factor correlations. SPSS v.18.0 tested for statistical significance.

Results: The diversity of SOB in surface water was higher than in springs (more than 7.27 times). We detected SOB affiliated to β-proteobacteria (72.3 %), α-proteobacteria (22.8 %), and γ-proteobacteria (4.2 %) distributed widely in these lakes and springs. Rhodoferax and Cupriavidus were most frequent in all water samples, while Rhodoferax and Bradyrhizobium are dominant in surface waters but rare in springs. SOB genera in both habitats were positively correlated. Co-occurrence analysis identified Bradyrhizobium, Blastochloris, Methylibium, and Metyhlobacterium as potential keystone taxa. Redundancy analysis (RDA) revealed positive correlations between SOB diversity and total carbon (TC), Fe2+, and total nitrogen (TN) in all water samples.

Conclusion: The diversity and community structure of SOB in volcanic lakes and springs in the Wudalianchi volcanic group were clarified. Moreover, the diversity and abundance of SOB decreased with the variation of water openness, from open lakes to semi-enclosed lakes and enclosed lakes.

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来源期刊
International Microbiology
International Microbiology 生物-生物工程与应用微生物
CiteScore
5.50
自引率
3.20%
发文量
67
审稿时长
3 months
期刊介绍: International Microbiology publishes information on basic and applied microbiology for a worldwide readership. The journal publishes articles and short reviews based on original research, articles about microbiologists and their work and questions related to the history and sociology of this science. Also offered are perspectives, opinion, book reviews and editorials. A distinguishing feature of International Microbiology is its broadening of the term microbiology to include eukaryotic microorganisms.
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