Chenchen Shi , Zhixin Jin , Yanping Yu , Zhuyun Tang , Yuguo Zhang , Chen Qu , Ta-Hui Lin
{"title":"基于结构分析鉴定和表征中华鹤的 TLR4 同源物","authors":"Chenchen Shi , Zhixin Jin , Yanping Yu , Zhuyun Tang , Yuguo Zhang , Chen Qu , Ta-Hui Lin","doi":"10.1016/j.dci.2024.105192","DOIUrl":null,"url":null,"abstract":"<div><p>Toll-like receptor 4 (TLR4) plays an essential role in the activation of innate immunity by recognizing diverse pathogenic components of bacteria. Six Tolls were found in <em>Eriocheir sinensis</em> but have not yet been identified as mammalian TLR4 homolog. For this purpose, we predicted three-dimensional (3D) structures of <em>Es</em>Tolls (<em>Es</em>Toll1-6) with AlphaFold2. 3D structure of LRRs and TIR most had high accuracy (pLDDT >70). By structure analysis, 3D structures of <em>Es</em>Toll6 had a high overlap with <em>Hs</em>TLR4. Moreover, we also predicted potential 11 hydrogen bonds and 3 salt bridges in the 3D structure of <em>Es</em>Toll6-<em>Es</em>ML1 complex. 18 hydrogen bonds and 7 salt bridges were predicted in <em>Es</em>Toll6-<em>Es</em>ML2 complex. Co-immunoprecipitation assay showed that <em>Es</em>Toll6 could interact with <em>Es</em>ML1 and <em>Es</em>ML2, respectively. Importantly, TAK242 (a mammalian TLR4-specific inhibitor) could inhibit the generation of ROS stimulated by lipopolysaccharides (LPS) in <em>Es</em>Toll6-<em>Es</em>ML2-overexpression Hela cells. Collectively, these results implied that <em>Es</em>Toll6 was a mammalian TLR4 homolog and provided a new insight for researching mammalian homologs in invertebrates.</p></div>","PeriodicalId":2,"journal":{"name":"ACS Applied Bio Materials","volume":null,"pages":null},"PeriodicalIF":4.6000,"publicationDate":"2024-05-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Identification and characterization of a TLR4 homologue in Eriocheir sinensis based on structure analysis\",\"authors\":\"Chenchen Shi , Zhixin Jin , Yanping Yu , Zhuyun Tang , Yuguo Zhang , Chen Qu , Ta-Hui Lin\",\"doi\":\"10.1016/j.dci.2024.105192\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Toll-like receptor 4 (TLR4) plays an essential role in the activation of innate immunity by recognizing diverse pathogenic components of bacteria. Six Tolls were found in <em>Eriocheir sinensis</em> but have not yet been identified as mammalian TLR4 homolog. For this purpose, we predicted three-dimensional (3D) structures of <em>Es</em>Tolls (<em>Es</em>Toll1-6) with AlphaFold2. 3D structure of LRRs and TIR most had high accuracy (pLDDT >70). By structure analysis, 3D structures of <em>Es</em>Toll6 had a high overlap with <em>Hs</em>TLR4. Moreover, we also predicted potential 11 hydrogen bonds and 3 salt bridges in the 3D structure of <em>Es</em>Toll6-<em>Es</em>ML1 complex. 18 hydrogen bonds and 7 salt bridges were predicted in <em>Es</em>Toll6-<em>Es</em>ML2 complex. Co-immunoprecipitation assay showed that <em>Es</em>Toll6 could interact with <em>Es</em>ML1 and <em>Es</em>ML2, respectively. Importantly, TAK242 (a mammalian TLR4-specific inhibitor) could inhibit the generation of ROS stimulated by lipopolysaccharides (LPS) in <em>Es</em>Toll6-<em>Es</em>ML2-overexpression Hela cells. Collectively, these results implied that <em>Es</em>Toll6 was a mammalian TLR4 homolog and provided a new insight for researching mammalian homologs in invertebrates.</p></div>\",\"PeriodicalId\":2,\"journal\":{\"name\":\"ACS Applied Bio Materials\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":4.6000,\"publicationDate\":\"2024-05-05\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"ACS Applied Bio Materials\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0145305X24000648\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"MATERIALS SCIENCE, BIOMATERIALS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Applied Bio Materials","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0145305X24000648","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MATERIALS SCIENCE, BIOMATERIALS","Score":null,"Total":0}
Identification and characterization of a TLR4 homologue in Eriocheir sinensis based on structure analysis
Toll-like receptor 4 (TLR4) plays an essential role in the activation of innate immunity by recognizing diverse pathogenic components of bacteria. Six Tolls were found in Eriocheir sinensis but have not yet been identified as mammalian TLR4 homolog. For this purpose, we predicted three-dimensional (3D) structures of EsTolls (EsToll1-6) with AlphaFold2. 3D structure of LRRs and TIR most had high accuracy (pLDDT >70). By structure analysis, 3D structures of EsToll6 had a high overlap with HsTLR4. Moreover, we also predicted potential 11 hydrogen bonds and 3 salt bridges in the 3D structure of EsToll6-EsML1 complex. 18 hydrogen bonds and 7 salt bridges were predicted in EsToll6-EsML2 complex. Co-immunoprecipitation assay showed that EsToll6 could interact with EsML1 and EsML2, respectively. Importantly, TAK242 (a mammalian TLR4-specific inhibitor) could inhibit the generation of ROS stimulated by lipopolysaccharides (LPS) in EsToll6-EsML2-overexpression Hela cells. Collectively, these results implied that EsToll6 was a mammalian TLR4 homolog and provided a new insight for researching mammalian homologs in invertebrates.