Amei Tang , Yang Liu , Guoqiang Guan , Tong Hao , Feng Cao
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Disease- and drug-specific targets were collated from a plethora of databases, including Batman-TCM, Stitch, Swiss Target Prediction and GeneCards. GO and KEGG pathways were analyzed for the collected targets. A PPI network was constructed using STRING database to isolate core targets. Molecular docking was executed using Auto Dock Tools and PyMOL software, and an animal model of COPD was developed for experimental validation.</div></div><div><h3>Results and conclusions</h3><div>Seven salient compounds and five core biological targets were ascertained through our analysis. Additionally, four compounds demonstrated high-affinity binding to the identified targets. Pathways involving bacterial endotoxin response, oxidative stress regulation, and endothelial cell migration were significantly enriched according to the KEGG database. Animal models substantiated that QFBYD ameliorated pathological hallmarks, enhanced respiratory functionality, mitigated overexpression of pro-inflammatory cytokines, augmented the antioxidant defense mechanism, and suppressed the hyperactivity of the five core targets. 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引用次数: 0
摘要
背景和目的目前慢性阻塞性肺疾病的治疗干预措施只能部分缓解症状,使大多数患者具有持续和显著的临床表现。本研究旨在通过网络药理学和分子对接技术等多学科方法,阐明清肺保元汤的潜在药理机制。实验程序QFBYD制剂进行质谱分析,随后通过TCMSP数据库鉴定关键化合物和生物靶点。疾病和药物特异性靶标是从大量数据库中整理出来的,包括Batman-TCM、Stitch、Swiss Target Prediction和GeneCards。对收集到的靶点进行GO和KEGG通路分析。利用STRING数据库构建PPI网络,分离核心目标。使用Auto Dock Tools和PyMOL软件进行分子对接,并建立COPD动物模型进行实验验证。结果与结论通过分析确定了7个突出化合物和5个核心生物学靶点。此外,四种化合物与鉴定的靶标表现出高亲和力结合。根据KEGG数据库,涉及细菌内毒素反应、氧化应激调节和内皮细胞迁移的途径显著丰富。动物模型证实,QFBYD改善了病理标志,增强了呼吸功能,减轻了促炎细胞因子的过度表达,增强了抗氧化防御机制,并抑制了五个核心靶点的过度活性。QFBYD在COPD治疗中的疗效可能主要归因于其调节炎症反应和纠正氧化失衡的作用。
Analyzing mechanisms of qing fei bao yuan decoction granules in treating COPD based on LC-MS, network pharmacology and in vivo methods
Background and aim
The current therapeutic interventions of chronic obstructive pulmonary disease offer only partial alleviation of symptoms, leaving the majority of patients with persistent and significant clinical manifestations. This investigation seeks to elucidate the underlying pharmacological mechanisms of Qing Fei Bao Yuan Decoction (QFBYD) employing a multidisciplinary approach that includes network pharmacology and molecular docking techniques.
Experimental procedure
The QFBYD formulation were subjected to mass spectrometry analysis, while critical compounds and biological targets were subsequently identified through the TCMSP database. Disease- and drug-specific targets were collated from a plethora of databases, including Batman-TCM, Stitch, Swiss Target Prediction and GeneCards. GO and KEGG pathways were analyzed for the collected targets. A PPI network was constructed using STRING database to isolate core targets. Molecular docking was executed using Auto Dock Tools and PyMOL software, and an animal model of COPD was developed for experimental validation.
Results and conclusions
Seven salient compounds and five core biological targets were ascertained through our analysis. Additionally, four compounds demonstrated high-affinity binding to the identified targets. Pathways involving bacterial endotoxin response, oxidative stress regulation, and endothelial cell migration were significantly enriched according to the KEGG database. Animal models substantiated that QFBYD ameliorated pathological hallmarks, enhanced respiratory functionality, mitigated overexpression of pro-inflammatory cytokines, augmented the antioxidant defense mechanism, and suppressed the hyperactivity of the five core targets. The efficacy of QFBYD in COPD treatment may be primarily attributed to its role in moderating inflammatory responses and rectifying oxidative imbalances.
期刊介绍:
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