Rodrigo M. Carrillo-Larco , Gusseppe Bravo-Rocca , Manuel Castillo-Cara , Xiaolin Xu , Antonio Bernabe-Ortiz
{"title":"在嵌入式机器学习分类器中使用眼底图像和文本元数据的多模态方法,预测自我报告的糖尿病患病年限--探索性分析。","authors":"Rodrigo M. Carrillo-Larco , Gusseppe Bravo-Rocca , Manuel Castillo-Cara , Xiaolin Xu , Antonio Bernabe-Ortiz","doi":"10.1016/j.pcd.2024.04.002","DOIUrl":null,"url":null,"abstract":"<div><h3>Aims</h3><p>Machine learning models can use image and text data to predict the number of years since diabetes diagnosis; such model can be applied to new patients to predict, approximately, how long the new patient may have lived with diabetes unknowingly. We aimed to develop a model to predict self-reported diabetes duration.</p></div><div><h3>Methods</h3><p>We used the Brazilian Multilabel Ophthalmological Dataset. Unit of analysis was the fundus image and its meta-data, regardless of the patient. We included people 40 + years and fundus images without diabetic retinopathy. Fundus images and meta-data (sex, age, comorbidities and taking insulin) were passed to the MedCLIP model to extract the embedding representation. The embedding representation was passed to an Extra Tree Classifier to predict: 0–4, 5–9, 10–14 and 15 + years with self-reported diabetes.</p></div><div><h3>Results</h3><p>There were 988 images from 563 people (mean age = 67 years; 64 % were women). Overall, the F1 score was 57 %. The group 15 + years of self-reported diabetes had the highest precision (64 %) and F1 score (63 %), while the highest recall (69 %) was observed in the group 0–4 years. The proportion of correctly classified observations was 55 % for the group 0–4 years, 51 % for 5–9 years, 58 % for 10–14 years, and 64 % for 15 + years with self-reported diabetes.</p></div><div><h3>Conclusions</h3><p>The machine learning model had acceptable accuracy and F1 score, and correctly classified more than half of the patients according to diabetes duration. Using large foundational models to extract image and text embeddings seems a feasible and efficient approach to predict years living with self-reported diabetes.</p></div>","PeriodicalId":48997,"journal":{"name":"Primary Care Diabetes","volume":"18 3","pages":"Pages 327-332"},"PeriodicalIF":2.6000,"publicationDate":"2024-04-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"A multimodal approach using fundus images and text meta-data in a machine learning classifier with embeddings to predict years with self-reported diabetes – An exploratory analysis\",\"authors\":\"Rodrigo M. 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The embedding representation was passed to an Extra Tree Classifier to predict: 0–4, 5–9, 10–14 and 15 + years with self-reported diabetes.</p></div><div><h3>Results</h3><p>There were 988 images from 563 people (mean age = 67 years; 64 % were women). Overall, the F1 score was 57 %. The group 15 + years of self-reported diabetes had the highest precision (64 %) and F1 score (63 %), while the highest recall (69 %) was observed in the group 0–4 years. The proportion of correctly classified observations was 55 % for the group 0–4 years, 51 % for 5–9 years, 58 % for 10–14 years, and 64 % for 15 + years with self-reported diabetes.</p></div><div><h3>Conclusions</h3><p>The machine learning model had acceptable accuracy and F1 score, and correctly classified more than half of the patients according to diabetes duration. 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引用次数: 0
摘要
目的机器学习模型可以利用图像和文本数据预测糖尿病确诊后的年数;这种模型可以应用于新患者,以预测新患者在不知情的情况下患糖尿病的大概时间。我们的目标是建立一个模型来预测自我报告的糖尿病病程。分析单位是眼底图像及其元数据,与患者无关。我们的研究对象包括 40 岁以上、眼底图像无糖尿病视网膜病变的患者。眼底图像和元数据(性别、年龄、合并症和服用胰岛素情况)被传递给 MedCLIP 模型,以提取嵌入表示。将嵌入表示法传递给 Extra Tree 分类器,以预测:0-4、5-9、10-14 和 15 岁以上自我报告的糖尿病患者。总体而言,F1 得分为 57%。自述有糖尿病的 15 岁以上年龄组的精确度(64%)和 F1 得分(63%)最高,而 0-4 岁年龄组的召回率(69%)最高。结论机器学习模型的精确度和F1得分均可接受,并能根据糖尿病病程对半数以上患者进行正确分类。使用大型基础模型提取图像和文本嵌入似乎是预测自我报告的糖尿病生存年限的一种可行而有效的方法。
A multimodal approach using fundus images and text meta-data in a machine learning classifier with embeddings to predict years with self-reported diabetes – An exploratory analysis
Aims
Machine learning models can use image and text data to predict the number of years since diabetes diagnosis; such model can be applied to new patients to predict, approximately, how long the new patient may have lived with diabetes unknowingly. We aimed to develop a model to predict self-reported diabetes duration.
Methods
We used the Brazilian Multilabel Ophthalmological Dataset. Unit of analysis was the fundus image and its meta-data, regardless of the patient. We included people 40 + years and fundus images without diabetic retinopathy. Fundus images and meta-data (sex, age, comorbidities and taking insulin) were passed to the MedCLIP model to extract the embedding representation. The embedding representation was passed to an Extra Tree Classifier to predict: 0–4, 5–9, 10–14 and 15 + years with self-reported diabetes.
Results
There were 988 images from 563 people (mean age = 67 years; 64 % were women). Overall, the F1 score was 57 %. The group 15 + years of self-reported diabetes had the highest precision (64 %) and F1 score (63 %), while the highest recall (69 %) was observed in the group 0–4 years. The proportion of correctly classified observations was 55 % for the group 0–4 years, 51 % for 5–9 years, 58 % for 10–14 years, and 64 % for 15 + years with self-reported diabetes.
Conclusions
The machine learning model had acceptable accuracy and F1 score, and correctly classified more than half of the patients according to diabetes duration. Using large foundational models to extract image and text embeddings seems a feasible and efficient approach to predict years living with self-reported diabetes.
期刊介绍:
The journal publishes original research articles and high quality reviews in the fields of clinical care, diabetes education, nutrition, health services, psychosocial research and epidemiology and other areas as far as is relevant for diabetology in a primary-care setting. The purpose of the journal is to encourage interdisciplinary research and discussion between all those who are involved in primary diabetes care on an international level. The Journal also publishes news and articles concerning the policies and activities of Primary Care Diabetes Europe and reflects the society''s aim of improving the care for people with diabetes mellitus within the primary-care setting.