转录组元分析描述了银屑病与肥胖之间的分子共性。

IF 5 3区 医学 Q1 GENETICS & HEREDITY
Charalabos Antonatos, Georgios K. Georgakilas, Evangelos Evangelou, Yiannis Vasilopoulos
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引用次数: 0

摘要

尽管有大量流行病学证据表明银屑病和肥胖症之间的合并率很高,但对共同炎症机制的系统性方法还没有进行充分的探讨。我们对可公开获得的 RNA 测序数据集进行了荟萃分析,利用晚期疾病特异性荟萃分析和共识基因共表达网络(cWGCNA),揭示了推测会加剧这两种疾病的潜在机制。单基因荟萃分析结果表明,炎症细胞表达谱的紊乱促进了几种常见的炎症机制。对这两种疾病之间基因重叠的评估显示,上调(n = 170,P 值 = 6.07 × 10-65)和下调(n = 49,P 值 = 7.1 × 10-7)基因之间存在显著重叠,这与 T 细胞反应和活化转录因子的增加有关。我们的 cWGCNA 方法分离出 48 个共识模块,这些模块与两种疾病中具有相似相关信号的白细胞分化或代谢途径有关。值得注意的是,我们的所有分析都证实了这两种疾病都与T辅助细胞(Th)17分化途径紊乱有关。我们通过全转录组分析得出的新发现描述了银屑病和肥胖之间的炎症共性,这意味着我们可以评估一些表达谱,这些表达谱可作为潜在的合并疾病进展生物标志物和治疗干预措施。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Transcriptomic meta-analysis characterizes molecular commonalities between psoriasis and obesity

Transcriptomic meta-analysis characterizes molecular commonalities between psoriasis and obesity
Despite the abundance of epidemiological evidence for the high comorbid rate between psoriasis and obesity, systematic approaches to common inflammatory mechanisms have not been adequately explored. We performed a meta-analysis of publicly available RNA-sequencing datasets to unveil putative mechanisms that are postulated to exacerbate both diseases, utilizing both late-stage, disease-specific meta-analyses and consensus gene co-expression network (cWGCNA). Single-gene meta-analyses reported several common inflammatory mechanisms fostered by the perturbed expression profile of inflammatory cells. Assessment of gene overlaps between both diseases revealed significant overlaps between up- (n = 170, P value = 6.07 × 10−65) and down-regulated (n = 49, P value = 7.1 × 10−7) genes, associated with increased T cell response and activated transcription factors. Our cWGCNA approach disentangled 48 consensus modules, associated with either the differentiation of leukocytes or metabolic pathways with similar correlation signals in both diseases. Notably, all our analyses confirmed the association of the perturbed T helper (Th)17 differentiation pathway in both diseases. Our novel findings through whole transcriptomic analyses characterize the inflammatory commonalities between psoriasis and obesity implying the assessment of several expression profiles that could serve as putative comorbid disease progression biomarkers and therapeutic interventions.
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来源期刊
Genes and immunity
Genes and immunity 医学-免疫学
CiteScore
8.90
自引率
4.00%
发文量
28
审稿时长
6-12 weeks
期刊介绍: Genes & Immunity emphasizes studies investigating how genetic, genomic and functional variations affect immune cells and the immune system, and associated processes in the regulation of health and disease. It further highlights articles on the transcriptional and posttranslational control of gene products involved in signaling pathways regulating immune cells, and protective and destructive immune responses.
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