利用英国每日经验数据,通过确定性模型和数据驱动模型建立 COVID-19 疾病模型

COVID Pub Date : 2024-02-18 DOI:10.3390/covid4020020
Janet O. Agbaje, Oluwatosin Babasola, Kabiru Michael Adeyemo, Abraham Baba Zhiri, A. J. Adigun, S. A. Lawal, Oluwole Adegoke Nuga, Roseline Toyin Abah, U. M. Adam, K. Oshinubi
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摘要

COVID-19 大流行对包括英国在内的世界各国产生了重大影响。英国面临着众多挑战,但其应对措施,包括快速疫苗接种运动,值得一提。虽然已经取得了进展,但对这一流行病的研究对于我们为未来的流行病做好适当准备非常重要。合作、警惕和继续遵守公共卫生措施对于我们走好恢复之路和建设未来的复原力至关重要。在本文中,我们使用数学模型(非线性微分方程模型)和统计模型(移动窗口上的时间序列模型)对 COVID-19 病毒从流行开始到 2022 年 7 月的传播动态进行了概述。这是通过将混合模型与英国的每日病例和死亡经验数据相结合来实现的。我们将该数据集划分为英国开始接种疫苗之前和之后的数据集,以了解接种疫苗对疾病动态的影响。我们利用数学模型进行了一些数学分析,并计算了基本繁殖数 (R0)。根据敏感性分析指数,我们推断出疫苗接种率的增加会降低 R0。此外,我们还将模型与英国的数据进行了拟合,用真实数据验证了数学模型,并利用这些数据计算了随时间变化的 R0。我们使用同调扰动法(HPM)进行数值模拟,以展示疾病在参数变化时的动态变化以及疫苗接种的重要性。此外,我们还使用统计建模来验证我们的模型,通过主成分分析(PCA)预测英国 COVID-19 爆发的传播演变,预测指标来自时间序列建模中的一些统计预测指标,以 14 天为移动窗口,检测这些指标中哪些能捕捉到疾病在整个流行曲线上的传播动态。PCA、分散指数、拟合数学模型和数学模型模拟的结果都与疫苗接种开始前后英国的疫情动态一致。总之,我们的方法能够捕捉到疾病爆发不同阶段的疫情动态,所展示的结果将有助于了解该疾病在英国的演变情况以及未来和新出现的疫情。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Modeling COVID-19 Disease with Deterministic and Data-Driven Models Using Daily Empirical Data in the United Kingdom
The COVID-19 pandemic has had a significant impact on countries worldwide, including the United Kingdom (UK). The UK has faced numerous challenges, but its response, including the rapid vaccination campaign, has been noteworthy. While progress has been made, the study of the pandemic is important to enable us to properly prepare for future epidemics. Collaboration, vigilance, and continued adherence to public health measures will be crucial in navigating the path to recovery and building resilience for the future. In this article, we propose an overview of the COVID-19 situation in the UK using both mathematical (a nonlinear differential equation model) and statistical (time series modeling on a moving window) models on the transmission dynamics of the COVID-19 virus from the beginning of the pandemic up until July 2022. This is achieved by integrating a hybrid model and daily empirical case and death data from the UK. We partition this dataset into before and after vaccination started in the UK to understand the influence of vaccination on disease dynamics. We used the mathematical model to present some mathematical analyses and the calculation of the basic reproduction number (R0). Following the sensitivity analysis index, we deduce that an increase in the rate of vaccination will decrease R0. Also, the model was fitted to the data from the UK to validate the mathematical model with real data, and we used the data to calculate time-varying R0. The homotopy perturbation method (HPM) was used for the numerical simulation to demonstrate the dynamics of the disease with varying parameters and the importance of vaccination. Furthermore, we used statistical modeling to validate our model by performing principal component analysis (PCA) to predict the evolution of the spread of the COVID-19 outbreak in the UK on some statistical predictor indicators from time series modeling on a 14-day moving window for detecting which of these indicators capture the dynamics of the disease spread across the epidemic curve. The results of the PCA, the index of dispersion, the fitted mathematical model, and the mathematical model simulation are all in agreement with the dynamics of the disease in the UK before and after vaccination started. Conclusively, our approach has been able to capture the dynamics of the pandemic at different phases of the disease outbreak, and the result presented will be useful to understand the evolution of the disease in the UK and future and emerging epidemics.
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