勐鸡线粒体基因组和系统发育关系分析

Thi Thanh Nhan Giang, Thi Phuong Mai Pham, Van Ba Nguyen, Thi Thu Thuy Tran, Thi Quynh Chau Nguyen, Thi Hau Tran, T. A. Hoang, Khanh Van Nguyen, Q. M. Luu, Doan Lan Pham
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引用次数: 0

摘要

本研究采用桑格测序法测定了越南本土鸡种勐鸡线粒体基因组的完整核苷酸序列,并对其进行了结构分析,以评估其与不同鸡种的系统发育关系。勐鸡线粒体基因组的完整核苷酸序列数据已在 GenBank 上注册,登录号为 OR643716。勐鸡线粒体基因组大小为 16785 碱基对(bp),包括 22 个转运 RNA 基因、2 个核糖体 RNA 基因、13 个蛋白编码基因和 1 个非编码控制区(D-环)。A、T、G和C核苷酸比例分别为30.28%、23.76%、13.48%和32.48%。基于 33 个完整线粒体基因组序列的系统进化关系分析结果表明,勐鸡的进化起源于红色丛林鸡亚种 Gallus gallus spadiceus。勐鸡与越南的东陶鸡和高山矮脚鸡、中国的如皋黄鸡和潇湘鸡关系密切。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Analysis of the mitochondrial genome and phylogenetic relationships of Mong chicken
In this study, the complete nucleotide sequence of the mitochondrial genome of the Mong chicken and an indigenous chicken breed of Vietnam, was determined by the Sanger sequencing method, structurally analysed and used to evaluate the phylogenetic relationship with different chicken breeds. The complete nucleotide sequence data of the Mong chicken’ mitochondrial genome was registered on GenBank with the accession number OR643716. The Mong chicken’ mitochondrial genome has a size of 16785 base pair (bp) and includes 22 transfer RNA genes, two ribosomal RNA genes, 13 protein-coding genes, and one non-coding control region (D-loop). A, T, G, and C nucleotide proportions were 30.28, 23.76, 13.48, and 32.48%, respectively. Results of the analysis of phylogenetic relationships based on 33 complete mitochondrial genome sequences showed that the Mong chicken has evolutional origin from the red junglefowl subspecies Gallus gallus spadiceus. The Mong chicken is in close relationship with the Dong Tao chicken and Cao Son dwarf chicken in Vietnam, Rugao yellow chicken and Xiaoxiang chicken in China.
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