对随时间变化的相干 X 射线散射实验进行高效的端到端模拟。

IF 2.5 3区 物理与天体物理
Journal of Synchrotron Radiation Pub Date : 2024-05-01 Epub Date: 2024-03-22 DOI:10.1107/S1600577524001267
Himanshu Goel, Oleg Chubar, Ruizi Li, Lutz Wiegart, Max Rakitin, Andrei Fluerasu
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引用次数: 0

摘要

光束线和实验的物理光学模拟使用户能够测试实验的可行性,并在光束时间之前优化光束线设置,以优化同步辐射光源(如 NSLS-II)的宝贵光束时间。此外,这种模拟还有助于提前开发和测试实验数据处理方法和软件。同步辐射工作室(SRW)软件包支持这种复杂的模拟。我们展示了 SRW 的最新发展如何显著提高物理光学模拟的效率,例如利用部分相干起爆器辐射(UR)对随时间变化的 X 射线光子相关光谱实验进行端到端模拟。我们选择了分子动力学模拟代码 LAMMPS 来模拟样品:室温下二氧化硅纳米粒子在水中的溶液。LAMMPS 生成的纳米粒子的真实空间分布被导入到 SRW 中,并用于模拟这种样品在探测器上对部分相干硬 X 射线 UR 的散射模式。照射样品的部分相干硬 X 射线 UR 可以用一组正交相干模式来表示,这组相干模式是通过相干硬 X 射线(CHX)散射光束线模拟这种辐射的发射和传播,然后进行相干模式分解而获得的。从样品到探测器的传播过程中使用的 SRW 的几个关键函数增加了 GPU 加速功能,进一步提高了计算速度。通过与实验数据的比较,对该模拟的准确性进行了基准测试。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Efficient end-to-end simulation of time-dependent coherent X-ray scattering experiments.

Efficient end-to-end simulation of time-dependent coherent X-ray scattering experiments.

Physical optics simulations for beamlines and experiments allow users to test experiment feasibility and optimize beamline settings ahead of beam time in order to optimize valuable beam time at synchrotron light sources like NSLS-II. Further, such simulations also help to develop and test experimental data processing methods and software in advance. The Synchrotron Radiation Workshop (SRW) software package supports such complex simulations. We demonstrate how recent developments in SRW significantly improve the efficiency of physical optics simulations, such as end-to-end simulations of time-dependent X-ray photon correlation spectroscopy experiments with partially coherent undulator radiation (UR). The molecular dynamics simulation code LAMMPS was chosen to model the sample: a solution of silica nanoparticles in water at room temperature. Real-space distributions of nanoparticles produced by LAMMPS were imported into SRW and used to simulate scattering patterns of partially coherent hard X-ray UR from such a sample at the detector. The partially coherent UR illuminating the sample can be represented by a set of orthogonal coherent modes obtained by simulation of emission and propagation of this radiation through the coherent hard X-ray (CHX) scattering beamline followed by a coherent-mode decomposition. GPU acceleration is added for several key functions of SRW used in propagation from sample to detector, further improving the speed of the calculations. The accuracy of this simulation is benchmarked by comparison with experimental data.

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来源期刊
Journal of Synchrotron Radiation
Journal of Synchrotron Radiation INSTRUMENTS & INSTRUMENTATIONOPTICS&-OPTICS
CiteScore
5.60
自引率
12.00%
发文量
289
审稿时长
1 months
期刊介绍: Synchrotron radiation research is rapidly expanding with many new sources of radiation being created globally. Synchrotron radiation plays a leading role in pure science and in emerging technologies. The Journal of Synchrotron Radiation provides comprehensive coverage of the entire field of synchrotron radiation and free-electron laser research including instrumentation, theory, computing and scientific applications in areas such as biology, nanoscience and materials science. Rapid publication ensures an up-to-date information resource for scientists and engineers in the field.
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