三叉神经痛转录组公告草案。

IF 1.4 4区生物学 Q2 ZOOLOGY

Journal of nematology Pub Date : 2024-03-20 eCollection Date: 2024-03-01 DOI:10.2478/jofnem-2024-0007

Manish Kumar, Neeraj, Alkesh Hada, Vishal Singh Somvanshi, Ashish Kumar Singh, Yashwant Kumar Yadava, Pradeep Kumar Jain, Kishore Gaikwad, Anil Sirohi

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引用次数: 0

摘要

小麦种瘿线虫 Anguina tritici 会引起小麦（Triticum sp.）的 "穗囊病 "或种瘿病，导致世界上不发达小麦种植国家的小麦大面积减产（30-70%）。据了解，线虫可在无水生物条件下存活长达 32 年。在这里，我们首次展示了三尖杉线虫的转录组，这将是了解线虫生存和地上植物寄生基因的宝贵资源。最终的 133.2 Mb 汇编包括 105606 个开放阅读框（包括同工酶），根据线虫数据库的 BUSCO 评分如下：80.3%完整（16.4%单拷贝，63.9%重复），2.1%片段，17.6%缺失。

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A Draft Transcriptome Announcement of Anguina tritici.

Anguina tritici, the wheat seed gall nematode, causes the 'ear-cockle' or seed gall disease of wheat (Triticum sp.), leading to an extensive decline of yield (30-70%) in underdeveloped wheat cultivating countries of the world. The nematode is known to survive in anhydrobiotic conditions for up to 32 years. Here, we present the first transcriptome assembly of A. tritici, which will be a valuable resource for understanding the genes responsible for nematode survival and above-ground plant parasitism. The final 133.2 Mb assembly consists of 105606 open reading frames (including isoforms) with the following BUSCO scores against Nematoda database: 80.3% complete (16.4% single copy and 63.9% duplicated), 2.1% fragmented, and 17.6% missing.

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来源期刊

Journal of nematology 生物-动物学

CiteScore

2.90

自引率

7.70%

发文量

审稿时长

14 weeks

期刊介绍： Journal of Nematology is the official technical and scientific communication publication of the Society of Nematologists since 1969. The journal publishes original papers on all aspects of basic, applied, descriptive, theoretical or experimental nematology and adheres to strict peer-review policy. Other categories of papers include invited reviews, research notes, abstracts of papers presented at annual meetings, and special publications as appropriate.