Niina Eklund, Cäcilia Engels, Michael Neumann, Andrzej Strug, Esther van Enckevort, Ronny Baber, Margreet Bloemers, Annelies Debucquoy, Aad van der Lugt, Heimo Müller, Lauri Parkkonen, Philip R Quinlan, Esmond Urwin, Petr Holub, Kaisa Silander, Gabriele Anton
{"title":"将《生物样本库数据共享最低限度信息》(MIABIS)核心术语更新至第三版。","authors":"Niina Eklund, Cäcilia Engels, Michael Neumann, Andrzej Strug, Esther van Enckevort, Ronny Baber, Margreet Bloemers, Annelies Debucquoy, Aad van der Lugt, Heimo Müller, Lauri Parkkonen, Philip R Quinlan, Esmond Urwin, Petr Holub, Kaisa Silander, Gabriele Anton","doi":"10.1089/bio.2023.0074","DOIUrl":null,"url":null,"abstract":"<p><p><b><i>Introduction:</i></b> The Minimum Information About BIobank Data Sharing (MIABIS) is a biobank-specific terminology enabling the sharing of biobank-related data for different purposes across a wide range of database implementations. After 4 years in use and with the first version of the individual-level MIABIS component <i>Sample</i>, <i>Sample donor,</i> and <i>Event</i>, it was necessary to revise the terminology, especially to include biobanks that work more in the data domain than with samples. <b><i>Materials & Methods:</i></b> Nine use-cases representing different types of biobanks, studies, and networks participated in the development work. They represent types of data, specific sample types, or levels of organization that were not included earlier in MIABIS. To support our revision of the <i>Biobank</i> entity, we conducted a survey of European biobanks to chart the services they provide. An important stakeholder group for biobanks include researchers as the main users of biobanks. To be able to render MIABIS more researcher-friendly, we collected different sample/data requests to analyze the terminology adjustment needs in detail. During the update process, the Core terminology was iteratively reviewed by a large group of experts until a consensus was reached. <b><i>Results:</i></b> With this update, MIABIS was adjusted to encompass data-driven biobanks and to include data collections, while also describing the services and capabilities biobanks offer to their users, besides the retrospective samples. The terminology was also extended to accommodate sample and data collections of nonhuman origin. Additionally, a set of organizational attributes was compiled to describe networks. <b><i>Discussion:</i></b> The usability of MIABIS Core v3 was increased by extending it to cover more topics of the biobanking domain. Additionally, the focus was on a more general terminology and harmonization of attributes with the individual-level entities <i>Sample, Sample donor, and Event</i> to keep the overall terminology minimal. With this work, the internal semantics of the MIABIS terminology was improved.</p>","PeriodicalId":55358,"journal":{"name":"Biopreservation and Biobanking","volume":" ","pages":"346-362"},"PeriodicalIF":1.6000,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Update of the Minimum Information About BIobank Data Sharing (MIABIS) Core Terminology to the 3<sup>rd</sup> Version.\",\"authors\":\"Niina Eklund, Cäcilia Engels, Michael Neumann, Andrzej Strug, Esther van Enckevort, Ronny Baber, Margreet Bloemers, Annelies Debucquoy, Aad van der Lugt, Heimo Müller, Lauri Parkkonen, Philip R Quinlan, Esmond Urwin, Petr Holub, Kaisa Silander, Gabriele Anton\",\"doi\":\"10.1089/bio.2023.0074\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><b><i>Introduction:</i></b> The Minimum Information About BIobank Data Sharing (MIABIS) is a biobank-specific terminology enabling the sharing of biobank-related data for different purposes across a wide range of database implementations. After 4 years in use and with the first version of the individual-level MIABIS component <i>Sample</i>, <i>Sample donor,</i> and <i>Event</i>, it was necessary to revise the terminology, especially to include biobanks that work more in the data domain than with samples. <b><i>Materials & Methods:</i></b> Nine use-cases representing different types of biobanks, studies, and networks participated in the development work. They represent types of data, specific sample types, or levels of organization that were not included earlier in MIABIS. To support our revision of the <i>Biobank</i> entity, we conducted a survey of European biobanks to chart the services they provide. An important stakeholder group for biobanks include researchers as the main users of biobanks. To be able to render MIABIS more researcher-friendly, we collected different sample/data requests to analyze the terminology adjustment needs in detail. During the update process, the Core terminology was iteratively reviewed by a large group of experts until a consensus was reached. <b><i>Results:</i></b> With this update, MIABIS was adjusted to encompass data-driven biobanks and to include data collections, while also describing the services and capabilities biobanks offer to their users, besides the retrospective samples. The terminology was also extended to accommodate sample and data collections of nonhuman origin. Additionally, a set of organizational attributes was compiled to describe networks. <b><i>Discussion:</i></b> The usability of MIABIS Core v3 was increased by extending it to cover more topics of the biobanking domain. Additionally, the focus was on a more general terminology and harmonization of attributes with the individual-level entities <i>Sample, Sample donor, and Event</i> to keep the overall terminology minimal. 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Update of the Minimum Information About BIobank Data Sharing (MIABIS) Core Terminology to the 3rd Version.
Introduction: The Minimum Information About BIobank Data Sharing (MIABIS) is a biobank-specific terminology enabling the sharing of biobank-related data for different purposes across a wide range of database implementations. After 4 years in use and with the first version of the individual-level MIABIS component Sample, Sample donor, and Event, it was necessary to revise the terminology, especially to include biobanks that work more in the data domain than with samples. Materials & Methods: Nine use-cases representing different types of biobanks, studies, and networks participated in the development work. They represent types of data, specific sample types, or levels of organization that were not included earlier in MIABIS. To support our revision of the Biobank entity, we conducted a survey of European biobanks to chart the services they provide. An important stakeholder group for biobanks include researchers as the main users of biobanks. To be able to render MIABIS more researcher-friendly, we collected different sample/data requests to analyze the terminology adjustment needs in detail. During the update process, the Core terminology was iteratively reviewed by a large group of experts until a consensus was reached. Results: With this update, MIABIS was adjusted to encompass data-driven biobanks and to include data collections, while also describing the services and capabilities biobanks offer to their users, besides the retrospective samples. The terminology was also extended to accommodate sample and data collections of nonhuman origin. Additionally, a set of organizational attributes was compiled to describe networks. Discussion: The usability of MIABIS Core v3 was increased by extending it to cover more topics of the biobanking domain. Additionally, the focus was on a more general terminology and harmonization of attributes with the individual-level entities Sample, Sample donor, and Event to keep the overall terminology minimal. With this work, the internal semantics of the MIABIS terminology was improved.
Biopreservation and BiobankingBiochemistry, Genetics and Molecular Biology-General Biochemistry,Genetics and Molecular Biology
自引率
12.50%
发文量
114
期刊介绍:
Biopreservation and Biobanking is the first journal to provide a unifying forum for the peer-reviewed communication of recent advances in the emerging and evolving field of biospecimen procurement, processing, preservation and banking, distribution, and use. The Journal publishes a range of original articles focusing on current challenges and problems in biopreservation, and advances in methods to address these issues related to the processing of macromolecules, cells, and tissues for research.
In a new section dedicated to Emerging Markets and Technologies, the Journal highlights the emergence of new markets and technologies that are either adopting or disrupting the biobank framework as they imprint on society. The solutions presented here are anticipated to help drive innovation within the biobank community.
Biopreservation and Biobanking also explores the ethical, legal, and societal considerations surrounding biobanking and biorepository operation. Ideas and practical solutions relevant to improved quality, efficiency, and sustainability of repositories, and relating to their management, operation and oversight are discussed as well.