利用贝叶斯实验设计调整病媒监测:应用于美国东南部正在进行的蜱虫监测计划

IF 3.1 2区 医学 Q2 INFECTIOUS DISEASES
B.K.M. Case , Kyndall C. Dye-Braumuller , Chris Evans , Huixuan Li , Lauren Rustin , Melissa S. Nolan
{"title":"利用贝叶斯实验设计调整病媒监测:应用于美国东南部正在进行的蜱虫监测计划","authors":"B.K.M. Case ,&nbsp;Kyndall C. Dye-Braumuller ,&nbsp;Chris Evans ,&nbsp;Huixuan Li ,&nbsp;Lauren Rustin ,&nbsp;Melissa S. Nolan","doi":"10.1016/j.ttbdis.2024.102329","DOIUrl":null,"url":null,"abstract":"<div><p>Maps of the distribution of medically-important ticks throughout the US remain lacking in spatial and temporal resolution in many areas, leading to holes in our understanding of where and when people are at risk of tick encounters, an important baseline for informing public health response. In this work, we demonstrate the use of Bayesian Experimental Design (BED) in planning spatiotemporal surveillance of disease vectors. We frame survey planning as an optimization problem with the objective of identifying a calendar of sampling locations that maximizes the expected information regarding some goal. Here we consider the goals of understanding associations between environmental factors and tick presence and minimizing uncertainty in high risk areas. We illustrate our proposed BED workflow using an ongoing tick surveillance study in South Carolina parks. Following a model comparison study based on two years of initial data, several techniques for finding optimal surveys were compared to random sampling. Two optimization algorithms found surveys better than all replications of random sampling, while a space-filling heuristic performed favorably as well. Further, optimal surveys of just 20 visits were more effective than repeating the schedule of 111 visits used in 2021. We conclude that BED shows promise as a flexible and rigorous means of survey design for vector control, and could help alleviate pressure on local agencies by limiting the resources necessary for accurate information on arthropod distributions. We have made the code for our BED workflow publicly available on Zenodo to help promote the application of these methods to future surveillance efforts.</p></div>","PeriodicalId":49320,"journal":{"name":"Ticks and Tick-borne Diseases","volume":"15 3","pages":"Article 102329"},"PeriodicalIF":3.1000,"publicationDate":"2024-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1877959X24000220/pdfft?md5=7b855d1a5ad9ed51317f1d70bd48a255&pid=1-s2.0-S1877959X24000220-main.pdf","citationCount":"0","resultStr":"{\"title\":\"Adapting vector surveillance using Bayesian experimental design: An application to an ongoing tick monitoring program in the southeastern United States\",\"authors\":\"B.K.M. Case ,&nbsp;Kyndall C. Dye-Braumuller ,&nbsp;Chris Evans ,&nbsp;Huixuan Li ,&nbsp;Lauren Rustin ,&nbsp;Melissa S. Nolan\",\"doi\":\"10.1016/j.ttbdis.2024.102329\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Maps of the distribution of medically-important ticks throughout the US remain lacking in spatial and temporal resolution in many areas, leading to holes in our understanding of where and when people are at risk of tick encounters, an important baseline for informing public health response. In this work, we demonstrate the use of Bayesian Experimental Design (BED) in planning spatiotemporal surveillance of disease vectors. We frame survey planning as an optimization problem with the objective of identifying a calendar of sampling locations that maximizes the expected information regarding some goal. Here we consider the goals of understanding associations between environmental factors and tick presence and minimizing uncertainty in high risk areas. We illustrate our proposed BED workflow using an ongoing tick surveillance study in South Carolina parks. Following a model comparison study based on two years of initial data, several techniques for finding optimal surveys were compared to random sampling. Two optimization algorithms found surveys better than all replications of random sampling, while a space-filling heuristic performed favorably as well. Further, optimal surveys of just 20 visits were more effective than repeating the schedule of 111 visits used in 2021. We conclude that BED shows promise as a flexible and rigorous means of survey design for vector control, and could help alleviate pressure on local agencies by limiting the resources necessary for accurate information on arthropod distributions. We have made the code for our BED workflow publicly available on Zenodo to help promote the application of these methods to future surveillance efforts.</p></div>\",\"PeriodicalId\":49320,\"journal\":{\"name\":\"Ticks and Tick-borne Diseases\",\"volume\":\"15 3\",\"pages\":\"Article 102329\"},\"PeriodicalIF\":3.1000,\"publicationDate\":\"2024-03-13\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.sciencedirect.com/science/article/pii/S1877959X24000220/pdfft?md5=7b855d1a5ad9ed51317f1d70bd48a255&pid=1-s2.0-S1877959X24000220-main.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Ticks and Tick-borne Diseases\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1877959X24000220\",\"RegionNum\":2,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"INFECTIOUS DISEASES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Ticks and Tick-borne Diseases","FirstCategoryId":"3","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1877959X24000220","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"INFECTIOUS DISEASES","Score":null,"Total":0}
引用次数: 0

摘要

在美国许多地区,医学上重要的蜱虫分布图仍然缺乏空间和时间分辨率,导致我们对人们何时何地可能遭遇蜱虫的了解存在漏洞,而这是为公共卫生应对措施提供信息的重要基线。在这项工作中,我们展示了如何利用贝叶斯实验设计(BED)来规划对病媒的时空监测。我们将调查规划视为一个优化问题,其目标是确定一个采样地点日历,使有关某些目标的预期信息最大化。在这里,我们考虑的目标是了解环境因素与蜱虫存在之间的关联,并将高风险地区的不确定性降到最低。我们利用南卡罗来纳州公园正在进行的蜱虫监测研究来说明我们提出的 BED 工作流程。在基于两年初始数据的模型比较研究之后,我们将几种寻找最佳调查方法的技术与随机抽样进行了比较。两种优化算法发现的调查效果优于随机抽样的所有重复,而空间填充启发式也表现出色。此外,仅 20 次访问的最优调查比重复 2021 年使用的 111 次访问更有效。我们的结论是,BED 作为病媒控制调查设计的一种灵活而严格的手段前景广阔,它可以通过限制获得节肢动物分布准确信息所需的资源来帮助减轻地方机构的压力。我们在 Zenodo 上公开了 BED 工作流程的代码,以帮助促进这些方法在未来监测工作中的应用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Adapting vector surveillance using Bayesian experimental design: An application to an ongoing tick monitoring program in the southeastern United States

Maps of the distribution of medically-important ticks throughout the US remain lacking in spatial and temporal resolution in many areas, leading to holes in our understanding of where and when people are at risk of tick encounters, an important baseline for informing public health response. In this work, we demonstrate the use of Bayesian Experimental Design (BED) in planning spatiotemporal surveillance of disease vectors. We frame survey planning as an optimization problem with the objective of identifying a calendar of sampling locations that maximizes the expected information regarding some goal. Here we consider the goals of understanding associations between environmental factors and tick presence and minimizing uncertainty in high risk areas. We illustrate our proposed BED workflow using an ongoing tick surveillance study in South Carolina parks. Following a model comparison study based on two years of initial data, several techniques for finding optimal surveys were compared to random sampling. Two optimization algorithms found surveys better than all replications of random sampling, while a space-filling heuristic performed favorably as well. Further, optimal surveys of just 20 visits were more effective than repeating the schedule of 111 visits used in 2021. We conclude that BED shows promise as a flexible and rigorous means of survey design for vector control, and could help alleviate pressure on local agencies by limiting the resources necessary for accurate information on arthropod distributions. We have made the code for our BED workflow publicly available on Zenodo to help promote the application of these methods to future surveillance efforts.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Ticks and Tick-borne Diseases
Ticks and Tick-borne Diseases INFECTIOUS DISEASES-MICROBIOLOGY
CiteScore
6.90
自引率
12.50%
发文量
185
审稿时长
6-12 weeks
期刊介绍: Ticks and Tick-borne Diseases is an international, peer-reviewed scientific journal. It publishes original research papers, short communications, state-of-the-art mini-reviews, letters to the editor, clinical-case studies, announcements of pertinent international meetings, and editorials. The journal covers a broad spectrum and brings together various disciplines, for example, zoology, microbiology, molecular biology, genetics, mathematical modelling, veterinary and human medicine. Multidisciplinary approaches and the use of conventional and novel methods/methodologies (in the field and in the laboratory) are crucial for deeper understanding of the natural processes and human behaviour/activities that result in human or animal diseases and in economic effects of ticks and tick-borne pathogens. Such understanding is essential for management of tick populations and tick-borne diseases in an effective and environmentally acceptable manner.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信