DGAMDA:基于动态图注意网络预测 miRNA 与疾病的关联。

IF 2.2 4区 医学 Q3 ENGINEERING, BIOMEDICAL
ChangXin Jia, FuYu Wang, Baoxiang Xing, ShaoNa Li, Yang Zhao, Yu Li, Qing Wang
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引用次数: 0

摘要

MiRNA(微RNA)与疾病的关联预测在早期疾病筛查中有着重要的应用。传统的生物学实验验证过程既耗时又昂贵。然而,随着人工智能技术的不断进步,计算方法已成为预测 miRNA 与疾病关联的有效工具。这些方法通常依赖于多种关联数据源的组合,需要改进特征挖掘。本研究提出了一种基于动态图注意力的关联预测模型--DGAMDA,它通过对单一miRNA-疾病关联网络的特征挖掘,结合了特征映射和动态图注意力机制。DGAMDA有效解决了以往静态图注意机制存在的特征异质性和特征挖掘不足的问题,实现了高精度的特征挖掘和关联评分预测。我们进行了五倍交叉验证实验,得到了准确率(Accuracy)、精确率(Precision)、召回率(Recall)和 F1 分数(F1-score)的平均值,分别为 .8986、.8869、.9115 和 .8984。从实验结果来看,我们提出的模型优于其他先进模型,证明了它在基于单一关联网络的特征挖掘和关联预测方面的有效性。此外,我们的模型还可用于预测与未知疾病相关的 miRNA。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

DGAMDA: Predicting miRNA-disease association based on dynamic graph attention network

DGAMDA: Predicting miRNA-disease association based on dynamic graph attention network

MiRNA (microRNA)-disease association prediction has essential applications for early disease screening. The process of traditional biological experimental validation is both time-consuming and expensive. However, as artificial intelligence technology continues to advance, computational methods have become efficient tools for predicting miRNA-disease associations. These methods often rely on the combination of multiple sources of association data and require improved feature mining. This study proposes a dynamic graph attention-based association prediction model, DGAMDA, which combines feature mapping and dynamic graph attention mechanisms through feature mining on a single miRNA-disease association network. DGAMDA effectively solves the problems of feature heterogeneity and inadequate feature mining by previous static graph attention mechanisms and achieves high-precision feature mining and association scoring prediction. We conducted a five-fold cross-validation experiment and obtained the mean values of Accuracy, Precision, Recall, and F1-score, which were .8986, .8869, .9115, and .8984, respectively. Our proposed model outperforms other advanced models in terms of experimental results, demonstrating its effectiveness in feature mining and association prediction based on a single association network. In addition, our model can also be used to predict miRNAs associated with unknown diseases.

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来源期刊
International Journal for Numerical Methods in Biomedical Engineering
International Journal for Numerical Methods in Biomedical Engineering ENGINEERING, BIOMEDICAL-MATHEMATICAL & COMPUTATIONAL BIOLOGY
CiteScore
4.50
自引率
9.50%
发文量
103
审稿时长
3 months
期刊介绍: All differential equation based models for biomedical applications and their novel solutions (using either established numerical methods such as finite difference, finite element and finite volume methods or new numerical methods) are within the scope of this journal. Manuscripts with experimental and analytical themes are also welcome if a component of the paper deals with numerical methods. Special cases that may not involve differential equations such as image processing, meshing and artificial intelligence are within the scope. Any research that is broadly linked to the wellbeing of the human body, either directly or indirectly, is also within the scope of this journal.
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