开发肺腺癌极性相关基因预后模型并分析免疫景观。

IF 3.2 4区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Hongqiu Xu, Wenqiang Du, Xuelong Jing, Jingen Xie, Pengfei Li
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引用次数: 0

摘要

尽管在肺腺癌(LUAD)的治疗方面取得了进展,但肺腺癌患者的总体预后仍不理想。虽然细胞极性在肿瘤侵袭和转移中的作用已得到公认,但其在肺腺癌中的预后意义仍不清楚。对癌症基因组图谱(TCGA)-LUAD和正常肺组织进行了差异分析,并通过差异表达基因与极性相关基因(PRGs)的交叉确定了候选基因。利用单变量和多变量 Cox 回归及 LASSO 回归构建了预后模型。为增强分析的稳健性,还结合相关临床信息进行了独立预后分析。利用生存分析和 ROC 曲线验证了模型的准确性和灵敏度。最后,对高风险和低风险患者进行了免疫景观、免疫疗法、肿瘤突变负荷和药物敏感性分析。筛选出十个预后基因,将 LUAD 患者分为不同的风险组。生存分析、ROC 曲线和单变量/多变量 Cox 回归分析共同证明了该模型的良好预测性能,它可以成为一个独立的预后因素。提名图与校准曲线相结合,证明了该模型在预测 LUAD 患者的总生存率方面具有令人信服的预测能力。与高风险患者相比,低风险 LUAD 患者的免疫细胞浸润、免疫评分和免疫检查点表达水平更高。因此,他们更有可能从免疫疗法中获益。与低风险组相比,高风险组的肿瘤突变负荷(TMB)明显更高。XAV-939、氟维司群和SR16157在LUAD的临床应用中可能具有潜在价值。我们揭示了PRGs与LUAD预后之间的潜在联系,这些预后因子在LUAD患者的风险分层和预后预测中的应用可能具有重要意义。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Development of a prognostic model for lung adenocarcinoma polarity-related genes and analysis of immune landscape

Despite the progress made in the management of lung adenocarcinoma (LUAD), the overall prognosis for LUAD individuals remains suboptimal. While the role of cell polarity in tumor invasion and metastasis is well established, its prognostic significance in LUAD is still unknown. Differential analysis was performed on the Cancer Genome Atlas (TCGA)-LUAD and normal lung tissue, and candidate genes were identified by intersecting differentially expressed genes with polarity-related genes (PRGs). A prognostic model was constructed using univariate and multivariate Cox regression and LASSO regression. To enhance the robustness of the analysis, an independent prognostic analysis was conducted by incorporating relevant clinical information. The accuracy and sensitivity of the model were validated using survival analysis and ROC curves. Finally, immune landscape, immune therapy, tumor mutation burden, and drug sensitivity analysis were carried out on high- and low-risk patients. Ten prognostic genes were screened to divide LUAD patients into different risk groups. Survival analysis, ROC curves, and univariate/multivariate Cox regression analyses collectively demonstrated the favorable predictive performance of the model, which could be an independent prognostic factor. The nomogram, in conjunction with the calibration curve, demonstrated the model's compelling predictive capacity in prognosticating the overall survival of LUAD individuals. Low-risk LUAD patients exhibited heightened levels of immune cell infiltration, immune scores, and immune checkpoint expression compared to high-risk individuals. So, they may have a greater likelihood of benefiting from immune therapy. The high-risk group demonstrated a remarkably higher tumor mutation burden (TMB) in contrast with the low-risk group. XAV-939, Fulvestrant, and SR16157 may have potential value in the clinical use of LUAD. We revealed the potential linkage between PRGs and LUAD prognosis, and the application of these prognostic factors in risk stratification and prognosis prediction of LUAD patients may be of great significance.

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来源期刊
Biotechnology and applied biochemistry
Biotechnology and applied biochemistry 工程技术-生化与分子生物学
CiteScore
6.00
自引率
7.10%
发文量
117
审稿时长
3 months
期刊介绍: Published since 1979, Biotechnology and Applied Biochemistry is dedicated to the rapid publication of high quality, significant research at the interface between life sciences and their technological exploitation. The Editors will consider papers for publication based on their novelty and impact as well as their contribution to the advancement of medical biotechnology and industrial biotechnology, covering cutting-edge research in synthetic biology, systems biology, metabolic engineering, bioengineering, biomaterials, biosensing, and nano-biotechnology.
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