Katrina Steiner , Wolfgang Bermel , Ronald Soong , Daniel H. Lysak , Amy Jenne , Katelyn Downey , William W. Wolff , Peter M. Costa , Kiera Ronda , Vincent Moxley-Paquette , Jacob Pellizzari , Andre J. Simpson
{"title":"用简单的 1H(12C/13C)过滤实验来量化和追踪复杂环境和生物样本中的同位素富集情况","authors":"Katrina Steiner , Wolfgang Bermel , Ronald Soong , Daniel H. Lysak , Amy Jenne , Katelyn Downey , William W. Wolff , Peter M. Costa , Kiera Ronda , Vincent Moxley-Paquette , Jacob Pellizzari , Andre J. Simpson","doi":"10.1016/j.jmr.2024.107653","DOIUrl":null,"url":null,"abstract":"<div><p>Nuclear magnetic resonance (NMR) based <sup>13</sup>C tracing has broad applications across medical and environmental research. As many biological and environmental samples are heterogeneous, they experience considerable spectral overlap and relatively low signal. Here a 1D <sup>1</sup>H–<sup>12</sup>C/<sup>13</sup>C is introduced that uses “in-phase/opposite-phase” encoding to simultaneously detect and discriminate both protons attached to <sup>12</sup>C and <sup>13</sup>C at full <sup>1</sup>H sensitivity in every scan. Unlike traditional approaches that focus on the <sup>12</sup>C/<sup>13</sup>C satellite ratios in a <sup>1</sup>H spectrum, this approach creates separate sub-spectra for the <sup>12</sup>C and <sup>13</sup>C bound protons. These spectra can be used for both quantitative and qualitative analysis of complex samples with significant spectral overlap. Due to the presence of the <sup>13</sup>C dipole, faster relaxation of the <sup>1</sup>H–<sup>13</sup>C pairs results in slight underestimation compared to the <sup>1</sup>H–<sup>12</sup>C pairs. However, this is easily compensated for, by collecting an additional reference spectrum, from which the absolute percentage of <sup>13</sup>C can be calculated by difference. When combined with the result, <sup>12</sup>C and <sup>13</sup>C percent enrichment in both <sup>1</sup>H–<sup>12</sup>C and <sup>1</sup>H–<sup>13</sup>C fractions are obtained. As the approach uses isotope filtered <sup>1</sup>H NMR for detection, it retains nearly the same sensitivity as a standard <sup>1</sup>H spectrum. Here, a proof-of-concept is performed using simple mixtures of <sup>12</sup>C and <sup>13</sup>C glucose, followed by suspended algal cells with varying <sup>12</sup>C /<sup>13</sup>C ratios representing a complex mixture. The results consistently return <sup>12</sup>C/<sup>13</sup>C ratios that deviate less than 1 % on average from the expected. Finally, the sequence was used to monitor and quantify <sup>13</sup>C% enrichment in <em>Daphnia magna</em> neonates which were fed a <sup>13</sup>C diet over 1 week. The approach helped reveal how the organisms utilized the <sup>12</sup>C lipids they are born with vs. the <sup>13</sup>C lipids they assimilate from their diet during growth. Given the experiments simplicity, versatility, and sensitivity, we anticipate it should find broad application in a wide range of tracer studies, such as fluxomics, with applications spanning various disciplines.</p></div>","PeriodicalId":16267,"journal":{"name":"Journal of magnetic resonance","volume":"361 ","pages":"Article 107653"},"PeriodicalIF":2.0000,"publicationDate":"2024-02-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1090780724000375/pdfft?md5=136568fdc7e8212556005d4d32e40998&pid=1-s2.0-S1090780724000375-main.pdf","citationCount":"0","resultStr":"{\"title\":\"A simple 1H (12C/13C) filtered experiment to quantify and trace isotope enrichment in complex environmental and biological samples\",\"authors\":\"Katrina Steiner , Wolfgang Bermel , Ronald Soong , Daniel H. Lysak , Amy Jenne , Katelyn Downey , William W. Wolff , Peter M. Costa , Kiera Ronda , Vincent Moxley-Paquette , Jacob Pellizzari , Andre J. Simpson\",\"doi\":\"10.1016/j.jmr.2024.107653\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Nuclear magnetic resonance (NMR) based <sup>13</sup>C tracing has broad applications across medical and environmental research. As many biological and environmental samples are heterogeneous, they experience considerable spectral overlap and relatively low signal. Here a 1D <sup>1</sup>H–<sup>12</sup>C/<sup>13</sup>C is introduced that uses “in-phase/opposite-phase” encoding to simultaneously detect and discriminate both protons attached to <sup>12</sup>C and <sup>13</sup>C at full <sup>1</sup>H sensitivity in every scan. Unlike traditional approaches that focus on the <sup>12</sup>C/<sup>13</sup>C satellite ratios in a <sup>1</sup>H spectrum, this approach creates separate sub-spectra for the <sup>12</sup>C and <sup>13</sup>C bound protons. These spectra can be used for both quantitative and qualitative analysis of complex samples with significant spectral overlap. Due to the presence of the <sup>13</sup>C dipole, faster relaxation of the <sup>1</sup>H–<sup>13</sup>C pairs results in slight underestimation compared to the <sup>1</sup>H–<sup>12</sup>C pairs. However, this is easily compensated for, by collecting an additional reference spectrum, from which the absolute percentage of <sup>13</sup>C can be calculated by difference. When combined with the result, <sup>12</sup>C and <sup>13</sup>C percent enrichment in both <sup>1</sup>H–<sup>12</sup>C and <sup>1</sup>H–<sup>13</sup>C fractions are obtained. As the approach uses isotope filtered <sup>1</sup>H NMR for detection, it retains nearly the same sensitivity as a standard <sup>1</sup>H spectrum. Here, a proof-of-concept is performed using simple mixtures of <sup>12</sup>C and <sup>13</sup>C glucose, followed by suspended algal cells with varying <sup>12</sup>C /<sup>13</sup>C ratios representing a complex mixture. The results consistently return <sup>12</sup>C/<sup>13</sup>C ratios that deviate less than 1 % on average from the expected. Finally, the sequence was used to monitor and quantify <sup>13</sup>C% enrichment in <em>Daphnia magna</em> neonates which were fed a <sup>13</sup>C diet over 1 week. The approach helped reveal how the organisms utilized the <sup>12</sup>C lipids they are born with vs. the <sup>13</sup>C lipids they assimilate from their diet during growth. Given the experiments simplicity, versatility, and sensitivity, we anticipate it should find broad application in a wide range of tracer studies, such as fluxomics, with applications spanning various disciplines.</p></div>\",\"PeriodicalId\":16267,\"journal\":{\"name\":\"Journal of magnetic resonance\",\"volume\":\"361 \",\"pages\":\"Article 107653\"},\"PeriodicalIF\":2.0000,\"publicationDate\":\"2024-02-29\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.sciencedirect.com/science/article/pii/S1090780724000375/pdfft?md5=136568fdc7e8212556005d4d32e40998&pid=1-s2.0-S1090780724000375-main.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of magnetic resonance\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1090780724000375\",\"RegionNum\":3,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"BIOCHEMICAL RESEARCH METHODS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of magnetic resonance","FirstCategoryId":"92","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1090780724000375","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
A simple 1H (12C/13C) filtered experiment to quantify and trace isotope enrichment in complex environmental and biological samples
Nuclear magnetic resonance (NMR) based 13C tracing has broad applications across medical and environmental research. As many biological and environmental samples are heterogeneous, they experience considerable spectral overlap and relatively low signal. Here a 1D 1H–12C/13C is introduced that uses “in-phase/opposite-phase” encoding to simultaneously detect and discriminate both protons attached to 12C and 13C at full 1H sensitivity in every scan. Unlike traditional approaches that focus on the 12C/13C satellite ratios in a 1H spectrum, this approach creates separate sub-spectra for the 12C and 13C bound protons. These spectra can be used for both quantitative and qualitative analysis of complex samples with significant spectral overlap. Due to the presence of the 13C dipole, faster relaxation of the 1H–13C pairs results in slight underestimation compared to the 1H–12C pairs. However, this is easily compensated for, by collecting an additional reference spectrum, from which the absolute percentage of 13C can be calculated by difference. When combined with the result, 12C and 13C percent enrichment in both 1H–12C and 1H–13C fractions are obtained. As the approach uses isotope filtered 1H NMR for detection, it retains nearly the same sensitivity as a standard 1H spectrum. Here, a proof-of-concept is performed using simple mixtures of 12C and 13C glucose, followed by suspended algal cells with varying 12C /13C ratios representing a complex mixture. The results consistently return 12C/13C ratios that deviate less than 1 % on average from the expected. Finally, the sequence was used to monitor and quantify 13C% enrichment in Daphnia magna neonates which were fed a 13C diet over 1 week. The approach helped reveal how the organisms utilized the 12C lipids they are born with vs. the 13C lipids they assimilate from their diet during growth. Given the experiments simplicity, versatility, and sensitivity, we anticipate it should find broad application in a wide range of tracer studies, such as fluxomics, with applications spanning various disciplines.
期刊介绍:
The Journal of Magnetic Resonance presents original technical and scientific papers in all aspects of magnetic resonance, including nuclear magnetic resonance spectroscopy (NMR) of solids and liquids, electron spin/paramagnetic resonance (EPR), in vivo magnetic resonance imaging (MRI) and spectroscopy (MRS), nuclear quadrupole resonance (NQR) and magnetic resonance phenomena at nearly zero fields or in combination with optics. The Journal''s main aims include deepening the physical principles underlying all these spectroscopies, publishing significant theoretical and experimental results leading to spectral and spatial progress in these areas, and opening new MR-based applications in chemistry, biology and medicine. The Journal also seeks descriptions of novel apparatuses, new experimental protocols, and new procedures of data analysis and interpretation - including computational and quantum-mechanical methods - capable of advancing MR spectroscopy and imaging.