人类 E3 连接酶 C-terminal to LisH(CTLH)降解复合物 Gid4 亚基的化学工具

IF 3.597 Q2 Pharmacology, Toxicology and Pharmaceutics
MedChemComm Pub Date : 2024-03-05 DOI:10.1039/D3MD00633F
Aliakbar Khalili Yazdi, Sumera Perveen, Cheng Dong, Xiaosheng Song, Aiping Dong, Magdalena M. Szewczyk, Matthew F. Calabrese, Agustin Casimiro-Garcia, Subramanyam Chakrapani, Matthew S. Dowling, Emel Ficici, Jisun Lee, Justin I. Montgomery, Thomas N. O'Connell, Grzegorz J. Skrzypek, Tuan P. Tran, Matthew D. Troutman, Feng Wang, Jennifer A. Young, Jinrong Min, Dalia Barsyte-Lovejoy, Peter J. Brown, Vijayaratnam Santhakumar, Cheryl H. Arrowsmith, Masoud Vedadi and Dafydd R. Owen
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引用次数: 0

摘要

我们开发了一种新型化学处理剂(PFI-E3H1)和一种化学探针(PFI-7),作为人类 E3 连接酶 CTLH 降解复合物 Gid4 亚基的配体。通过高效的初始命中识别(hit-ID)活动、基于结构的药物设计(SBDD)以及利用规模庞大的辉瑞化合物库,我们仅通过文件筛选就为这种 E3 连接酶找到了 500 nM 的配体。通过进一步探索,我们找到了一种可以添加连接体的载体,用于未来的嵌合分子设计。随后对化学探针的化学型进行了优化,使其与 Gid4 的结合亲和力达到 100 nM 以下。这些新工具以及合适的阴性对照,将有助于研究这种复杂的人类 E3 连接酶大分子组装。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Chemical tools for the Gid4 subunit of the human E3 ligase C-terminal to LisH (CTLH) degradation complex†

Chemical tools for the Gid4 subunit of the human E3 ligase C-terminal to LisH (CTLH) degradation complex†

Chemical tools for the Gid4 subunit of the human E3 ligase C-terminal to LisH (CTLH) degradation complex†

We have developed a novel chemical handle (PFI-E3H1) and a chemical probe (PFI-7) as ligands for the Gid4 subunit of the human E3 ligase CTLH degradation complex. Through an efficient initial hit-ID campaign, structure-based drug design (SBDD) and leveraging the sizeable Pfizer compound library, we identified a 500 nM ligand for this E3 ligase through file screening alone. Further exploration identified a vector that is tolerant to addition of a linker for future chimeric molecule design. The chemotype was subsequently optimized to sub-100 nM Gid4 binding affinity for a chemical probe. These novel tools, alongside the suitable negative control also identified, should enable the interrogation of this complex human E3 ligase macromolecular assembly.

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来源期刊
MedChemComm
MedChemComm BIOCHEMISTRY & MOLECULAR BIOLOGY-CHEMISTRY, MEDICINAL
CiteScore
4.70
自引率
0.00%
发文量
0
审稿时长
2.2 months
期刊介绍: Research and review articles in medicinal chemistry and related drug discovery science; the official journal of the European Federation for Medicinal Chemistry. In 2020, MedChemComm will change its name to RSC Medicinal Chemistry. Issue 12, 2019 will be the last issue as MedChemComm.
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