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引用次数: 0
摘要
分子动力学(MD)能够以出色的时空分辨率研究物理系统,但却受到严重的时间尺度限制。为解决这一问题,人们开发了增强型采样方法,以改进对构型空间的探索。然而,这些方法的实施具有挑战性,需要领域专业知识。近年来,机器学习(ML)技术在不同领域的应用前景广阔,这促使它们也被应用到增强采样中。尽管机器学习技术因其数据驱动的特性而经常被应用于各个领域,但它与增强采样的整合却更为自然,因为两者之间存在许多共同的协同效应。本综述通过介绍不同的共同观点来探讨 ML 与增强 MD 的融合。它对这一快速发展的领域进行了全面概述,而这一领域的最新情况可能很难掌握。我们重点介绍了降维、强化学习和基于流的方法等成功策略。最后,我们讨论了在令人兴奋的 ML 增强 MD 接口方面的开放性问题。物理化学年刊》第 75 卷的最终在线出版日期预计为 2024 年 4 月。修订后的预计日期请参见 http://www.annualreviews.org/page/journal/pubdates。
Molecular dynamics (MD) enables the study of physical systems with excellent spatiotemporal resolution but suffers from severe timescale limitations. To address this, enhanced sampling methods have been developed to improve the exploration of configurational space. However, implementing these methods is challenging and requires domain expertise. In recent years, integration of machine learning (ML) techniques into different domains has shown promise, prompting their adoption in enhanced sampling as well. Although ML is often employed in various fields primarily due to its data-driven nature, its integration with enhanced sampling is more natural with many common underlying synergies. This review explores the merging of ML and enhanced MD by presenting different shared viewpoints. It offers a comprehensive overview of this rapidly evolving field, which can be difficult to stay updated on. We highlight successful strategies such as dimensionality reduction, reinforcement learning, and flow-based methods. Finally, we discuss open problems at the exciting ML-enhanced MD interface.
期刊介绍:
The Annual Review of Physical Chemistry has been published since 1950 and is a comprehensive resource for significant advancements in the field. It encompasses various sub-disciplines such as biophysical chemistry, chemical kinetics, colloids, electrochemistry, geochemistry and cosmochemistry, chemistry of the atmosphere and climate, laser chemistry and ultrafast processes, the liquid state, magnetic resonance, physical organic chemistry, polymers and macromolecules, and others.