A. Vizzini, P. Alvarado, G. Consiglio, M. Marchetti, J. Xu
{"title":"姬松茸目中的家族事务:基于更新的 6 基因系统发育,对原生姬松茸类、褶姬松茸类和三姬松类群进行系统重组和分类","authors":"A. Vizzini, P. Alvarado, G. Consiglio, M. Marchetti, J. Xu","doi":"10.3114/sim.2024.107.02","DOIUrl":null,"url":null,"abstract":"The phylogenetic position of several clitocyboid/pleurotoid/tricholomatoid genera previously considered <jats:italic>incertae sedis</jats:italic> is here resolved using an updated 6-gene dataset of <jats:italic>Agaricales</jats:italic> including newly sequenced lineages and more complete data from those already analyzed before. Results allowed to infer new phylogenetic relationships, and propose taxonomic novelties to accommodate them, including up to ten new families and a new suborder. <jats:italic>Giacomia</jats:italic> (for which a new species from China is here described) forms a monophyletic clade with <jats:italic>Melanoleuca</jats:italic> (<jats:italic>Melanoleucaceae</jats:italic>) nested inside suborder <jats:italic>Pluteineae</jats:italic>, together with the families <jats:italic>Pluteaceae</jats:italic>, <jats:italic>Amanitaceae</jats:italic> (including <jats:italic>Leucocortinarius</jats:italic>), <jats:italic>Limnoperdaceae</jats:italic> and <jats:italic>Volvariellaceae</jats:italic>. The recently described family <jats:italic>Asproinocybaceae</jats:italic> is shown to be a later synonym of <jats:italic>Lyophyllaceae</jats:italic> (which includes also <jats:italic>Omphaliaster</jats:italic> and <jats:italic>Trichocybe</jats:italic>) within suborder <jats:italic>Tricholomatineae</jats:italic>. The families <jats:italic>Biannulariaceae</jats:italic>, <jats:italic>Callistosporiaceae</jats:italic>, <jats:italic>Clitocybaceae</jats:italic>, <jats:italic>Fayodiaceae</jats:italic>, <jats:italic>Macrocystidiaceae</jats:italic> (which includes <jats:italic>Pseudoclitopilus</jats:italic>), <jats:italic>Entolomataceae</jats:italic>, <jats:italic>Pseudoclitocybaceae</jats:italic> (which includes <jats:italic>Aspropaxillus</jats:italic>), <jats:italic>Omphalinaceae</jats:italic> (<jats:italic>Infundibulicybe</jats:italic> and <jats:italic>Omphalina</jats:italic>) and the new families <jats:italic>Paralepistaceae</jats:italic> and <jats:italic>Pseudoomphalinaceae</jats:italic> belong also to <jats:italic>Tricholomatineae</jats:italic>. The delimitation of the suborder <jats:italic>Pleurotineae</jats:italic> (= <jats:italic>Schizophyllineae</jats:italic>) is discussed and revised, accepting five distinct families within it, <jats:italic>viz</jats:italic>. <jats:italic>Pleurotaceae</jats:italic>, <jats:italic>Cyphellopsidaceae</jats:italic>, <jats:italic>Fistulinaceae</jats:italic>, <jats:italic>Resupinataceae</jats:italic> and <jats:italic>Schizophyllaceae</jats:italic>. The recently proposed suborder <jats:italic>Phyllotopsidineae</jats:italic> (= <jats:italic>Sarcomyxineae</jats:italic>) is found to encompass the families <jats:italic>Aphroditeolaceae</jats:italic>, <jats:italic>Pterulaceae</jats:italic>, <jats:italic>Phyllotopsidaceae</jats:italic>, <jats:italic>Radulomycetaceae</jats:italic>, <jats:italic>Sarcomyxaceae</jats:italic> (which includes <jats:italic>Tectella</jats:italic>), and <jats:italic>Stephanosporaceae</jats:italic>, all of them unrelated to <jats:italic>Pleurotaceae</jats:italic> (suborder <jats:italic>Pleurotineae</jats:italic>) or <jats:italic>Typhulaceae</jats:italic> (suborder <jats:italic>Typhulineae</jats:italic>). The new family <jats:italic>Xeromphalinaceae</jats:italic>, encompassing the genera <jats:italic>Xeromphalina</jats:italic> and <jats:italic>Heimiomyces</jats:italic>, is proposed within <jats:italic>Marasmiineae</jats:italic>. The suborder <jats:italic>Hygrophorineae</jats:italic> is here reorganized into the families <jats:italic>Hygrophoraceae</jats:italic>, <jats:italic>Cantharellulaceae</jats:italic>, <jats:italic>Cuphophyllaceae</jats:italic>, <jats:italic>Hygrocybaceae</jats:italic> and <jats:italic>Lichenomphaliaceae</jats:italic>, to homogenize the taxonomic rank of the main clades inside all suborders of <jats:italic>Agaricales</jats:italic>. Finally, the genus <jats:italic>Hygrophorocybe</jats:italic> is shown to represent a distinct clade inside <jats:italic>Cuphophyllaceae</jats:italic>, and the new combination <jats:italic>H. carolinensis</jats:italic> is proposed.","PeriodicalId":22036,"journal":{"name":"Studies in Mycology","volume":null,"pages":null},"PeriodicalIF":14.1000,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Family matters inside the order Agaricales: systematic reorganization and classification of incertae sedis clitocyboid, pleurotoid and tricholomatoid taxa based on an updated 6-gene phylogeny\",\"authors\":\"A. Vizzini, P. Alvarado, G. Consiglio, M. Marchetti, J. Xu\",\"doi\":\"10.3114/sim.2024.107.02\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"The phylogenetic position of several clitocyboid/pleurotoid/tricholomatoid genera previously considered <jats:italic>incertae sedis</jats:italic> is here resolved using an updated 6-gene dataset of <jats:italic>Agaricales</jats:italic> including newly sequenced lineages and more complete data from those already analyzed before. Results allowed to infer new phylogenetic relationships, and propose taxonomic novelties to accommodate them, including up to ten new families and a new suborder. <jats:italic>Giacomia</jats:italic> (for which a new species from China is here described) forms a monophyletic clade with <jats:italic>Melanoleuca</jats:italic> (<jats:italic>Melanoleucaceae</jats:italic>) nested inside suborder <jats:italic>Pluteineae</jats:italic>, together with the families <jats:italic>Pluteaceae</jats:italic>, <jats:italic>Amanitaceae</jats:italic> (including <jats:italic>Leucocortinarius</jats:italic>), <jats:italic>Limnoperdaceae</jats:italic> and <jats:italic>Volvariellaceae</jats:italic>. The recently described family <jats:italic>Asproinocybaceae</jats:italic> is shown to be a later synonym of <jats:italic>Lyophyllaceae</jats:italic> (which includes also <jats:italic>Omphaliaster</jats:italic> and <jats:italic>Trichocybe</jats:italic>) within suborder <jats:italic>Tricholomatineae</jats:italic>. The families <jats:italic>Biannulariaceae</jats:italic>, <jats:italic>Callistosporiaceae</jats:italic>, <jats:italic>Clitocybaceae</jats:italic>, <jats:italic>Fayodiaceae</jats:italic>, <jats:italic>Macrocystidiaceae</jats:italic> (which includes <jats:italic>Pseudoclitopilus</jats:italic>), <jats:italic>Entolomataceae</jats:italic>, <jats:italic>Pseudoclitocybaceae</jats:italic> (which includes <jats:italic>Aspropaxillus</jats:italic>), <jats:italic>Omphalinaceae</jats:italic> (<jats:italic>Infundibulicybe</jats:italic> and <jats:italic>Omphalina</jats:italic>) and the new families <jats:italic>Paralepistaceae</jats:italic> and <jats:italic>Pseudoomphalinaceae</jats:italic> belong also to <jats:italic>Tricholomatineae</jats:italic>. The delimitation of the suborder <jats:italic>Pleurotineae</jats:italic> (= <jats:italic>Schizophyllineae</jats:italic>) is discussed and revised, accepting five distinct families within it, <jats:italic>viz</jats:italic>. <jats:italic>Pleurotaceae</jats:italic>, <jats:italic>Cyphellopsidaceae</jats:italic>, <jats:italic>Fistulinaceae</jats:italic>, <jats:italic>Resupinataceae</jats:italic> and <jats:italic>Schizophyllaceae</jats:italic>. The recently proposed suborder <jats:italic>Phyllotopsidineae</jats:italic> (= <jats:italic>Sarcomyxineae</jats:italic>) is found to encompass the families <jats:italic>Aphroditeolaceae</jats:italic>, <jats:italic>Pterulaceae</jats:italic>, <jats:italic>Phyllotopsidaceae</jats:italic>, <jats:italic>Radulomycetaceae</jats:italic>, <jats:italic>Sarcomyxaceae</jats:italic> (which includes <jats:italic>Tectella</jats:italic>), and <jats:italic>Stephanosporaceae</jats:italic>, all of them unrelated to <jats:italic>Pleurotaceae</jats:italic> (suborder <jats:italic>Pleurotineae</jats:italic>) or <jats:italic>Typhulaceae</jats:italic> (suborder <jats:italic>Typhulineae</jats:italic>). The new family <jats:italic>Xeromphalinaceae</jats:italic>, encompassing the genera <jats:italic>Xeromphalina</jats:italic> and <jats:italic>Heimiomyces</jats:italic>, is proposed within <jats:italic>Marasmiineae</jats:italic>. The suborder <jats:italic>Hygrophorineae</jats:italic> is here reorganized into the families <jats:italic>Hygrophoraceae</jats:italic>, <jats:italic>Cantharellulaceae</jats:italic>, <jats:italic>Cuphophyllaceae</jats:italic>, <jats:italic>Hygrocybaceae</jats:italic> and <jats:italic>Lichenomphaliaceae</jats:italic>, to homogenize the taxonomic rank of the main clades inside all suborders of <jats:italic>Agaricales</jats:italic>. Finally, the genus <jats:italic>Hygrophorocybe</jats:italic> is shown to represent a distinct clade inside <jats:italic>Cuphophyllaceae</jats:italic>, and the new combination <jats:italic>H. carolinensis</jats:italic> is proposed.\",\"PeriodicalId\":22036,\"journal\":{\"name\":\"Studies in Mycology\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":14.1000,\"publicationDate\":\"2024-02-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Studies in Mycology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.3114/sim.2024.107.02\",\"RegionNum\":1,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"MYCOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Studies in Mycology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.3114/sim.2024.107.02","RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"MYCOLOGY","Score":null,"Total":0}
Family matters inside the order Agaricales: systematic reorganization and classification of incertae sedis clitocyboid, pleurotoid and tricholomatoid taxa based on an updated 6-gene phylogeny
The phylogenetic position of several clitocyboid/pleurotoid/tricholomatoid genera previously considered incertae sedis is here resolved using an updated 6-gene dataset of Agaricales including newly sequenced lineages and more complete data from those already analyzed before. Results allowed to infer new phylogenetic relationships, and propose taxonomic novelties to accommodate them, including up to ten new families and a new suborder. Giacomia (for which a new species from China is here described) forms a monophyletic clade with Melanoleuca (Melanoleucaceae) nested inside suborder Pluteineae, together with the families Pluteaceae, Amanitaceae (including Leucocortinarius), Limnoperdaceae and Volvariellaceae. The recently described family Asproinocybaceae is shown to be a later synonym of Lyophyllaceae (which includes also Omphaliaster and Trichocybe) within suborder Tricholomatineae. The families Biannulariaceae, Callistosporiaceae, Clitocybaceae, Fayodiaceae, Macrocystidiaceae (which includes Pseudoclitopilus), Entolomataceae, Pseudoclitocybaceae (which includes Aspropaxillus), Omphalinaceae (Infundibulicybe and Omphalina) and the new families Paralepistaceae and Pseudoomphalinaceae belong also to Tricholomatineae. The delimitation of the suborder Pleurotineae (= Schizophyllineae) is discussed and revised, accepting five distinct families within it, viz. Pleurotaceae, Cyphellopsidaceae, Fistulinaceae, Resupinataceae and Schizophyllaceae. The recently proposed suborder Phyllotopsidineae (= Sarcomyxineae) is found to encompass the families Aphroditeolaceae, Pterulaceae, Phyllotopsidaceae, Radulomycetaceae, Sarcomyxaceae (which includes Tectella), and Stephanosporaceae, all of them unrelated to Pleurotaceae (suborder Pleurotineae) or Typhulaceae (suborder Typhulineae). The new family Xeromphalinaceae, encompassing the genera Xeromphalina and Heimiomyces, is proposed within Marasmiineae. The suborder Hygrophorineae is here reorganized into the families Hygrophoraceae, Cantharellulaceae, Cuphophyllaceae, Hygrocybaceae and Lichenomphaliaceae, to homogenize the taxonomic rank of the main clades inside all suborders of Agaricales. Finally, the genus Hygrophorocybe is shown to represent a distinct clade inside Cuphophyllaceae, and the new combination H. carolinensis is proposed.
期刊介绍:
The international journal Studies in Mycology focuses on advancing the understanding of filamentous fungi, yeasts, and various aspects of mycology. It publishes comprehensive systematic monographs as well as topical issues covering a wide range of subjects including biotechnology, ecology, molecular biology, pathology, and systematics. This Open-Access journal offers unrestricted access to its content.
Each issue of Studies in Mycology consists of around 5 to 6 papers, either in the form of monographs or special focused topics. Unlike traditional length restrictions, the journal encourages submissions of manuscripts with a minimum of 50 A4 pages in print. This ensures a thorough exploration and presentation of the research findings, maximizing the depth of the published work.