{"title":"基于 d-lopp 的东南亚 Gallus sp：硅学研究。","authors":"Zultinur Muttaqin, Tike Sartika, Ferdy Saputra","doi":"10.5455/javar.2023.j738","DOIUrl":null,"url":null,"abstract":"<p><strong>Objective: </strong>This study was conducted to analyze the matrilineal structure of <i>Gallus</i> sp<i>.</i> in Southeast Asia, especially in the D-loop region.</p><p><strong>Materials and method: </strong>A total of 563 sequences from eight countries (Laos, Myanmar, Vietnam, Malaysia, Indonesia, Cambodia, the Philippines, and Thailand) in Southeast Asia are used in this study. Data collected from National Center for Biotechnology Information (NCBI) regarding the genus <i>Gallus</i> sp. in a Southeast Asian country. Data analysis was performed using MEGA 7.2 and DnaSP v6.</p><p><strong>Results: </strong>In the haplotype found in <i>Gallus</i> sp. in Southeast Asia, there are 89 haplotypes. Using a neighbor-joining (Nj) analysis, 89 haplotypes found three haplogroups for <i>Gallus</i> sp. in Southeast Asia. In Southeast Asia, the genetic diversity of the d-loop is exceptionally high, with a haplotype diversity value of 0.524 to 1.</p><p><strong>Conclusion: </strong>D-loop cannot be used as a specific marker for breeds or country-specifics.</p>","PeriodicalId":14892,"journal":{"name":"Journal of Advanced Veterinary and Animal Research","volume":"10 4","pages":"817-819"},"PeriodicalIF":1.5000,"publicationDate":"2023-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10868693/pdf/","citationCount":"0","resultStr":"{\"title\":\"Genetic diversity of <i>Gallus</i> sp. in Southeast Asia based on d-lopp: <i>In silico</i> study.\",\"authors\":\"Zultinur Muttaqin, Tike Sartika, Ferdy Saputra\",\"doi\":\"10.5455/javar.2023.j738\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Objective: </strong>This study was conducted to analyze the matrilineal structure of <i>Gallus</i> sp<i>.</i> in Southeast Asia, especially in the D-loop region.</p><p><strong>Materials and method: </strong>A total of 563 sequences from eight countries (Laos, Myanmar, Vietnam, Malaysia, Indonesia, Cambodia, the Philippines, and Thailand) in Southeast Asia are used in this study. Data collected from National Center for Biotechnology Information (NCBI) regarding the genus <i>Gallus</i> sp. in a Southeast Asian country. Data analysis was performed using MEGA 7.2 and DnaSP v6.</p><p><strong>Results: </strong>In the haplotype found in <i>Gallus</i> sp. in Southeast Asia, there are 89 haplotypes. Using a neighbor-joining (Nj) analysis, 89 haplotypes found three haplogroups for <i>Gallus</i> sp. in Southeast Asia. In Southeast Asia, the genetic diversity of the d-loop is exceptionally high, with a haplotype diversity value of 0.524 to 1.</p><p><strong>Conclusion: </strong>D-loop cannot be used as a specific marker for breeds or country-specifics.</p>\",\"PeriodicalId\":14892,\"journal\":{\"name\":\"Journal of Advanced Veterinary and Animal Research\",\"volume\":\"10 4\",\"pages\":\"817-819\"},\"PeriodicalIF\":1.5000,\"publicationDate\":\"2023-12-31\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10868693/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Advanced Veterinary and Animal Research\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.5455/javar.2023.j738\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2023/12/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q3\",\"JCRName\":\"AGRICULTURE, DAIRY & ANIMAL SCIENCE\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Advanced Veterinary and Animal Research","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.5455/javar.2023.j738","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2023/12/1 0:00:00","PubModel":"eCollection","JCR":"Q3","JCRName":"AGRICULTURE, DAIRY & ANIMAL SCIENCE","Score":null,"Total":0}
Genetic diversity of Gallus sp. in Southeast Asia based on d-lopp: In silico study.
Objective: This study was conducted to analyze the matrilineal structure of Gallus sp. in Southeast Asia, especially in the D-loop region.
Materials and method: A total of 563 sequences from eight countries (Laos, Myanmar, Vietnam, Malaysia, Indonesia, Cambodia, the Philippines, and Thailand) in Southeast Asia are used in this study. Data collected from National Center for Biotechnology Information (NCBI) regarding the genus Gallus sp. in a Southeast Asian country. Data analysis was performed using MEGA 7.2 and DnaSP v6.
Results: In the haplotype found in Gallus sp. in Southeast Asia, there are 89 haplotypes. Using a neighbor-joining (Nj) analysis, 89 haplotypes found three haplogroups for Gallus sp. in Southeast Asia. In Southeast Asia, the genetic diversity of the d-loop is exceptionally high, with a haplotype diversity value of 0.524 to 1.
Conclusion: D-loop cannot be used as a specific marker for breeds or country-specifics.
求助内容：
应助结果提醒方式：
京公网安备 11010802042870号
