花生毁灭性真菌病原体 Nothopassalora personata(同属 Cercosporidium personatum)的染色体级基因组序列

Maricel Gonzales, Brian L. Abernathy, Robert Kemerait, David Bertioli, Marin Brewer, Soraya Leal-Bertioli
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引用次数: 0

摘要

Nothopassalora personata 是后期叶斑病的病原菌,是一种具有重要经济价值的真菌,对全世界的花生生产构成重大威胁。目前,对 N. personata 的研究主要集中在流行病学、寄主抗性、早期环境检测,以及基于数量有限的基因进行分类的分子研究。高质量的全基因组序列是研究复杂物种、确定致病性和适应性分子机制的重要工具。本研究报告了一个高质量的 N. personata 染色体级基因组组装,总长度为 54.6 Mb,N50 为 2.54 Mb,最长等位基因长度为 4.47 Mb,BUSCO 基因组完整性得分为 99.5%,大部分基因为单拷贝基因。基因组注释发现了 11,295 个编码蛋白质的基因和 12,121 个转录本,其中 995 个预测蛋白质中有 411 个是假定的效应蛋白。与密切相关的真菌 Dothistroma septosporum NZE10 和 Fulvia fulva(同属 Passalora fulva、Cladosporium fulvum)分离物 Race 5 的基因组比较显示有 13 条染色体。该基因组序列资源可用作多个分离物序列比对的参考,从而提供有关人形蓟马多样性和种群遗传结构的相关信息,为花生抗性育种计划提供进一步信息,并制定最佳的病害管理策略。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Chromosome-scale genome sequence of Nothopassalora personata (syn. Cercosporidium personatum), a devastating fungal pathogen of peanut
Nothopassalora personata, the causal agent of late leaf spot, is an economically important fungus that poses a significant threat to peanut production worldwide. Currently, studies on N. personata are focused on epidemiology, host resistance, early environmental detection, and molecular studies based on a limited number of genes for classification. A high-quality whole genome sequence can be a valuable tool for studying complex species and identifying molecular mechanisms in pathogenicity and adaptation. This study reports a high-quality, chromosome-scale genome assembly for N. personata with a total length of 54.6 Mb, an N50 of 2.54 Mb, a longest contig length of 4.47 Mb and a BUSCO genome completeness score of 99.5% with mostly single copy genes. Genome annotation revealed 11,295 protein-encoding genes and 12,121 transcripts in which 411 of the 995 predicted proteins were putative effectors. Genome comparison with the closely related fungi Dothistroma septosporum NZE10 and Fulvia fulva (syn. Passalora fulva, Cladosporium fulvum) isolate Race 5 revealed 13 chromosomes. This genome sequence resource can be used as a reference for aligning sequences of multiple isolates to provide relevant information on the diversity and population genetic structure of N. personata to further inform peanut resistance breeding programs and devise the best disease management strategies.
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