{"title":"基因组脆弱性 \"的解释问题源于当地适应和不适应的概念问题","authors":"K. Lotterhos","doi":"10.1093/evlett/qrae004","DOIUrl":null,"url":null,"abstract":"\n As climate change causes the environment to shift away from the local optimum that populations have adapted to, fitness declines are predicted to occur. Recently, methods known as genomic offsets (GOs) have become a popular tool to predict population responses to climate change from landscape genomic data. Populations with a high GO have been interpreted to have a high “genomic vulnerability” to climate change. GOs are often implicitly interpreted as a fitness offset, or a change in fitness of an individual or population in a new environment compared to a reference. However, there are several different types of fitness offset that can be calculated, and the appropriate choice depends on the management goals. This study uses hypothetical and empirical data to explore situations in which different types of fitness offsets may or may not be correlated with each other or with a GO. The examples reveal that even when GOs predict fitness offsets in a common garden experiment, this does not necessarily validate their ability to predict fitness offsets to environmental change. Conceptual examples are also used to show how a large GO can arise under a positive fitness offset, and thus cannot be interpreted as a population vulnerability. These issues can be resolved with robust validation experiments that can evaluate which fitness offsets are correlated with GOs.","PeriodicalId":3,"journal":{"name":"ACS Applied Electronic Materials","volume":null,"pages":null},"PeriodicalIF":4.3000,"publicationDate":"2024-02-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Interpretation issues with “genomic vulnerability” arise from conceptual issues in local adaptation and maladaptation\",\"authors\":\"K. Lotterhos\",\"doi\":\"10.1093/evlett/qrae004\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"\\n As climate change causes the environment to shift away from the local optimum that populations have adapted to, fitness declines are predicted to occur. Recently, methods known as genomic offsets (GOs) have become a popular tool to predict population responses to climate change from landscape genomic data. Populations with a high GO have been interpreted to have a high “genomic vulnerability” to climate change. GOs are often implicitly interpreted as a fitness offset, or a change in fitness of an individual or population in a new environment compared to a reference. However, there are several different types of fitness offset that can be calculated, and the appropriate choice depends on the management goals. This study uses hypothetical and empirical data to explore situations in which different types of fitness offsets may or may not be correlated with each other or with a GO. The examples reveal that even when GOs predict fitness offsets in a common garden experiment, this does not necessarily validate their ability to predict fitness offsets to environmental change. Conceptual examples are also used to show how a large GO can arise under a positive fitness offset, and thus cannot be interpreted as a population vulnerability. These issues can be resolved with robust validation experiments that can evaluate which fitness offsets are correlated with GOs.\",\"PeriodicalId\":3,\"journal\":{\"name\":\"ACS Applied Electronic Materials\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":4.3000,\"publicationDate\":\"2024-02-08\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"ACS Applied Electronic Materials\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1093/evlett/qrae004\",\"RegionNum\":3,\"RegionCategory\":\"材料科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"ENGINEERING, ELECTRICAL & ELECTRONIC\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Applied Electronic Materials","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1093/evlett/qrae004","RegionNum":3,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"ENGINEERING, ELECTRICAL & ELECTRONIC","Score":null,"Total":0}
引用次数: 0
摘要
随着气候变化导致环境偏离种群已适应的当地最佳环境,预计会出现适应性下降。最近,被称为基因组抵消(GOs)的方法已成为从景观基因组数据预测种群对气候变化反应的流行工具。GO值高的种群被解释为对气候变化具有较高的 "基因组脆弱性"。GO通常被隐含地解释为适应性偏移,或个体或种群在新环境中与参考环境相比的适应性变化。然而,有几种不同类型的适应度偏移可以计算,而适当的选择取决于管理目标。本研究利用假设和经验数据来探讨不同类型的适应度偏移可能相互关联,也可能与 GO 无关的情况。这些例子揭示了,即使在普通的花园实验中,GO 预测了适应性偏移,也不一定就能证明它们有能力预测环境变化带来的适应性偏移。概念性的例子还说明了在正向适应性偏移的情况下如何会出现大的 GO,因此不能将其解释为种群的脆弱性。这些问题可以通过稳健的验证实验来解决,这些实验可以评估哪些适应性偏移与 GO 相关。
Interpretation issues with “genomic vulnerability” arise from conceptual issues in local adaptation and maladaptation
As climate change causes the environment to shift away from the local optimum that populations have adapted to, fitness declines are predicted to occur. Recently, methods known as genomic offsets (GOs) have become a popular tool to predict population responses to climate change from landscape genomic data. Populations with a high GO have been interpreted to have a high “genomic vulnerability” to climate change. GOs are often implicitly interpreted as a fitness offset, or a change in fitness of an individual or population in a new environment compared to a reference. However, there are several different types of fitness offset that can be calculated, and the appropriate choice depends on the management goals. This study uses hypothetical and empirical data to explore situations in which different types of fitness offsets may or may not be correlated with each other or with a GO. The examples reveal that even when GOs predict fitness offsets in a common garden experiment, this does not necessarily validate their ability to predict fitness offsets to environmental change. Conceptual examples are also used to show how a large GO can arise under a positive fitness offset, and thus cannot be interpreted as a population vulnerability. These issues can be resolved with robust validation experiments that can evaluate which fitness offsets are correlated with GOs.