{"title":"乳腺癌中希波信号通路相关微RNA的硅学分析","authors":"Hunayna M. Bhavnagari, Franky D. Shah","doi":"10.1016/j.humgen.2024.201269","DOIUrl":null,"url":null,"abstract":"<div><p>Breast cancer (BC) is recognized as the leading cause of death among women worldwide. The hippo signaling pathway is a tumor-suppressive pathway, that regulates organ size, and cell regeneration. Dysregulation of the hippo pathway by the epigenetic modulator, noncoding RNAs (ncRNA) including microRNA(miR) promotes tumorigenesis through many cellular processes, including over proliferation, apoptosis resistance, and cell migration. This study aimed to identify aberrantly expressed miR, associated pathways, and targeted genes in BC. Data of mostly studied miRs were obtained from the miR Cancer database and PubMed. In addition pathway analysis and target prediction of scrutinized miRs were performed by DIANA miRPath v.3.Further functional and enrichment analyses of selected miRs were performed by Gene ontology(GO) annotation tool in DIANA miRPath v.3.Total nine hundred fifteen studies were included for analysis from which 54 mostly studied miRs were identified. Pathway enrichment analysis showed that among 54 miRs, 40 miRs have been significantly associated with core components of the hippo pathway (p-0.00049).i.e. Salvador Family WW Domain-Containing Protein (SAV1), Mammalian STE20-like 1/2(MST1/2), Mps One Binder Kinase Activator Protein 1(MOB1A/B), Large Tumor Suppressor Kinase 1/2 (LATS1/2), Yes-Associated Protein (YAP1), Transcriptional Coactivator With PDZ-binding Motif (TAZ), TEA Domain Transcription Factor (TEAD). The top nine miRs that were strongly associated with these genes have been selected from 40 miRs. I.e. hsa-miR-22-3p, hsa-miR-181a-5p, hsa-let-7a-5p, hsa-miR-34a-5p, hsa-miR-335-5p, hsa-miR-182-5p, hsa-miR-20a-5p, hsa-miR-27a-3p, hsa- miR-335-3p. These miRs play a very important role in apoptosis, tumor development and metastasis, and the prognosis of BC. Hence, the interaction of these miRs with the hippo pathway would modulate the molecular mechanism of the hippo signaling pathway. Thus, experimental studies are required to demonstrate the microRNAs and their targeted genes of the hippo signaling pathway, provide new research ideas for the treatment and diagnosis of BC.</p></div>","PeriodicalId":29686,"journal":{"name":"Human Gene","volume":"39 ","pages":"Article 201269"},"PeriodicalIF":0.5000,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2773044124000135/pdfft?md5=5c78d89618106c3460604edabd2840f3&pid=1-s2.0-S2773044124000135-main.pdf","citationCount":"0","resultStr":"{\"title\":\"In silico analysis of hippo signaling pathway associated microRNAs in breast cancer\",\"authors\":\"Hunayna M. Bhavnagari, Franky D. Shah\",\"doi\":\"10.1016/j.humgen.2024.201269\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Breast cancer (BC) is recognized as the leading cause of death among women worldwide. The hippo signaling pathway is a tumor-suppressive pathway, that regulates organ size, and cell regeneration. Dysregulation of the hippo pathway by the epigenetic modulator, noncoding RNAs (ncRNA) including microRNA(miR) promotes tumorigenesis through many cellular processes, including over proliferation, apoptosis resistance, and cell migration. This study aimed to identify aberrantly expressed miR, associated pathways, and targeted genes in BC. Data of mostly studied miRs were obtained from the miR Cancer database and PubMed. In addition pathway analysis and target prediction of scrutinized miRs were performed by DIANA miRPath v.3.Further functional and enrichment analyses of selected miRs were performed by Gene ontology(GO) annotation tool in DIANA miRPath v.3.Total nine hundred fifteen studies were included for analysis from which 54 mostly studied miRs were identified. Pathway enrichment analysis showed that among 54 miRs, 40 miRs have been significantly associated with core components of the hippo pathway (p-0.00049).i.e. Salvador Family WW Domain-Containing Protein (SAV1), Mammalian STE20-like 1/2(MST1/2), Mps One Binder Kinase Activator Protein 1(MOB1A/B), Large Tumor Suppressor Kinase 1/2 (LATS1/2), Yes-Associated Protein (YAP1), Transcriptional Coactivator With PDZ-binding Motif (TAZ), TEA Domain Transcription Factor (TEAD). The top nine miRs that were strongly associated with these genes have been selected from 40 miRs. I.e. hsa-miR-22-3p, hsa-miR-181a-5p, hsa-let-7a-5p, hsa-miR-34a-5p, hsa-miR-335-5p, hsa-miR-182-5p, hsa-miR-20a-5p, hsa-miR-27a-3p, hsa- miR-335-3p. These miRs play a very important role in apoptosis, tumor development and metastasis, and the prognosis of BC. Hence, the interaction of these miRs with the hippo pathway would modulate the molecular mechanism of the hippo signaling pathway. Thus, experimental studies are required to demonstrate the microRNAs and their targeted genes of the hippo signaling pathway, provide new research ideas for the treatment and diagnosis of BC.</p></div>\",\"PeriodicalId\":29686,\"journal\":{\"name\":\"Human Gene\",\"volume\":\"39 \",\"pages\":\"Article 201269\"},\"PeriodicalIF\":0.5000,\"publicationDate\":\"2024-02-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.sciencedirect.com/science/article/pii/S2773044124000135/pdfft?md5=5c78d89618106c3460604edabd2840f3&pid=1-s2.0-S2773044124000135-main.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Human Gene\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2773044124000135\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"GENETICS & HEREDITY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Human Gene","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2773044124000135","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
引用次数: 0
摘要
乳腺癌(BC)被认为是全球妇女死亡的主要原因。hippo 信号通路是一种肿瘤抑制通路,可调节器官大小和细胞再生。非编码 RNA(ncRNA)(包括 microRNA(miR))是表观遗传调控因子,它们对 hippo 通路的失调会通过多种细胞过程促进肿瘤发生,包括过度增殖、抗凋亡和细胞迁移。本研究旨在确定 BC 中异常表达的 miR、相关通路和靶基因。大部分研究的 miRs 数据来自 miR Cancer 数据库和 PubMed。DIANA miRPath v.3 中的基因本体(GO)注释工具对选定的 miRs 进行了进一步的功能和富集分析。通路富集分析表明,在 54 个 miRs 中,有 40 个 miRs 与河马通路的核心成分有显著相关性(p-0.00049)。Salvador Family WW Domain-Containing Protein (SAV1)、Mammalian STE20-like 1/2 (MST1/2)、Mps One Binder Kinase Activator Protein 1(MOB1A/B)、Large Tumor Suppressor Kinase 1/2 (LATS1/2)、Yes-Associated Protein (YAP1)、Transcriptional Coactivator With PDZ-binding Motif (TAZ)、TEA Domain Transcription Factor (TEAD)。从 40 个 miRs 中选出了与这些基因密切相关的前 9 个 miRs。即 hsa-miR-22-3p、hsa-miR-181a-5p、hsa-let-7a-5p、hsa-miR-34a-5p、hsa-miR-335-5p、hsa-miR-182-5p、hsa-miR-20a-5p、hsa-miR-27a-3p、hsa-miR-335-3p。这些 miRs 在 BC 的细胞凋亡、肿瘤发生和转移以及预后中起着非常重要的作用。因此,这些 miRs 与 hippo 通路的相互作用将调节 hippo 信号通路的分子机制。因此,需要通过实验研究来证明海马信号通路的microRNA及其靶基因,为BC的治疗和诊断提供新的研究思路。
In silico analysis of hippo signaling pathway associated microRNAs in breast cancer
Breast cancer (BC) is recognized as the leading cause of death among women worldwide. The hippo signaling pathway is a tumor-suppressive pathway, that regulates organ size, and cell regeneration. Dysregulation of the hippo pathway by the epigenetic modulator, noncoding RNAs (ncRNA) including microRNA(miR) promotes tumorigenesis through many cellular processes, including over proliferation, apoptosis resistance, and cell migration. This study aimed to identify aberrantly expressed miR, associated pathways, and targeted genes in BC. Data of mostly studied miRs were obtained from the miR Cancer database and PubMed. In addition pathway analysis and target prediction of scrutinized miRs were performed by DIANA miRPath v.3.Further functional and enrichment analyses of selected miRs were performed by Gene ontology(GO) annotation tool in DIANA miRPath v.3.Total nine hundred fifteen studies were included for analysis from which 54 mostly studied miRs were identified. Pathway enrichment analysis showed that among 54 miRs, 40 miRs have been significantly associated with core components of the hippo pathway (p-0.00049).i.e. Salvador Family WW Domain-Containing Protein (SAV1), Mammalian STE20-like 1/2(MST1/2), Mps One Binder Kinase Activator Protein 1(MOB1A/B), Large Tumor Suppressor Kinase 1/2 (LATS1/2), Yes-Associated Protein (YAP1), Transcriptional Coactivator With PDZ-binding Motif (TAZ), TEA Domain Transcription Factor (TEAD). The top nine miRs that were strongly associated with these genes have been selected from 40 miRs. I.e. hsa-miR-22-3p, hsa-miR-181a-5p, hsa-let-7a-5p, hsa-miR-34a-5p, hsa-miR-335-5p, hsa-miR-182-5p, hsa-miR-20a-5p, hsa-miR-27a-3p, hsa- miR-335-3p. These miRs play a very important role in apoptosis, tumor development and metastasis, and the prognosis of BC. Hence, the interaction of these miRs with the hippo pathway would modulate the molecular mechanism of the hippo signaling pathway. Thus, experimental studies are required to demonstrate the microRNAs and their targeted genes of the hippo signaling pathway, provide new research ideas for the treatment and diagnosis of BC.