基于网络药理学和实验验证探索山奈酚减轻败血症相关急性呼吸窘迫综合征的分子机制

Weichao Ding, Changbao Huang, Juan Chen, Wei Zhang, Mengmeng Wang, Xiaohang Ji, Shinan Nie, Zhaorui Sun
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引用次数: 0

摘要

背景:脓毒症相关急性呼吸窘迫综合征(ARDS)是一种没有有效治疗的致命疾病。山奈酚是从天然植物中提取的一种黄酮类化合物,具有多种药理作用。山奈酚可减轻脓毒症相关的 ARDS,但其潜在的保护机制尚未完全阐明:本研究旨在利用网络药理学和实验验证研究山奈酚减轻败血症相关 ARDS 的机制:方法:我们通过 PharMapper、Swiss Target Prediction 和 CTD 数据库筛选山奈酚的靶点。我们通过 GeneCards、DisGeNet、OMIM 和 TTD 确定了败血症相关 ARDS 的靶点。我们使用威盛新平台绘制了山奈酚和败血症相关 ARDS 的靶标图。我们绘制了一张维恩图来确定交叉靶标。我们使用 Cytoscape 3.9.1 软件构建了 "成分-交叉靶标-疾病 "网络图。交叉靶标被导入 STRING 数据库,用于建立蛋白质-蛋白质相互作用网络。使用 Metascape 进行基因本体(GO)和京都基因组百科全书(KEGG)富集分析。我们选择了领先的 20 个 KEGG 通路来建立 KEGG 关系网络。最后,我们进行了实验验证,以确认我们的预测结果:通过数据库筛选,我们分别获得了 502、360 和 78 个山奈酚靶标、脓毒症相关 ARDS 疾病靶标和交叉靶标。核心靶点包括肿瘤坏死因子-α(TNF-α)、白细胞介素(IL)-6、白蛋白(ALB)、IL-1β和AKT丝氨酸/苏氨酸激酶(AKT)1。GO 富集分析确定了 426 个项目,主要涉及对脂多糖的反应、炎症反应的调控、炎症反应、细胞迁移的正向调控、细胞粘附的正向调控、蛋白磷酸化的正向调控、对激素的反应、活性氧(ROS)代谢过程的调控、凋亡信号通路的负向调控以及对氧水平降低的反应。KEGG 富集分析确定了 151 条通路。在剔除疾病和泛化通路后,我们得到了缺氧诱导因子 1(HIF-1)、核因子κB(NF-κB)和磷脂肌醇 3- 激酶(PI3K)-Akt 信号通路。我们的实验证实,山奈酚能阻断 HIF-1、NF-κB 和 PI3K-Akt 信号通路,减少 TNF-α、IL-1β 和 IL-6 的表达,抑制 ROS 的产生,并抑制脂多糖(LPS)诱导的小鼠肺泡巨噬细胞(MH-S)的细胞凋亡:山奈酚可通过作用于HIF-1、NF-κB和PI3K-Akt信号通路,减轻炎症反应、ROS产生和细胞凋亡,从而缓解与脓毒症相关的ARDS。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Exploring the Molecular Mechanism by which Kaempferol Attenuates Sepsis-related Acute Respiratory Distress Syndrome Based on Network Pharmacology and Experimental Verification.

Background: Sepsis-related acute respiratory distress syndrome (ARDS) is a fatal disease without effective therapy. Kaempferol is a flavonoid compound extracted from natural plant products; it exerts numerous pharmacological effects. Kaempferol attenuates sepsis-related ARDS; however, the underlying protective mechanism has not been elucidated completely.

Objective: This study aimed to use network pharmacology and experimental verification to investigate the mechanisms by which kaempferol attenuates sepsis-related ARDS.

Methods: We screened the targets of kaempferol by PharMapper, Swiss Target Prediction, and CTD database. We identified the targets of sepsis-related ARDS by GeneCards, DisGeNet, OMIM, and TTD. The Weishengxin platform was used to map the targets of both kaempferol and sepsis-related ARDS. We created a Venn diagram to identify the intersection targets. We constructed the "component-intersection targets-disease" network diagram using Cytoscape 3.9.1 software. The intersection targets were imported into the STRING database for developing the protein-protein interaction network. Metascape was used for the Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis. We selected the leading 20 KEGG pathways to establish the KEGG relationship network. Finally, we performed experimental verification to confirm our prediction results.

Results: Through database screening, we obtained 502, 360, and 78 kaempferol targets, disease targets of sepsis-related ARDS, and intersection targets, respectively. The core targets consisted of tumor necrosis factor-alpha (TNF-α), interleukin (IL)-6, albumin (ALB), IL-1β, and AKT serine/ threonine kinase (AKT)1. GO enrichment analysis identified 426 items, which were principally involved in response to lipopolysaccharide, regulation of inflammatory response, inflammatory response, positive regulation of cell migration, positive regulation of cell adhesion, positive regulation of protein phosphorylation, response to hormone, regulation of reactive oxygen species (ROS) metabolic process, negative regulation of apoptotic signaling pathway, and response to decreased oxygen levels. KEGG enrichment analysis identified 151 pathways. After eliminating the disease and generalized pathways, we obtained the hypoxia-inducible factor 1 (HIF-1), nuclear factor κB (NF-κB), and phosphoinositide 3-kinase (PI3K)-Akt signaling pathways. Our experimental verification confirmed that kaempferol blocked the HIF-1, NF-κB, and PI3K-Akt signaling pathways, diminished TNF-α, IL-1β, and IL-6 expressions, suppressed ROS production, and inhibited apoptosis in lipopolysaccharide (LPS)-induced murine alveolar macrophage (MH-S) cells.

Conclusion: Kaempferol can reduce inflammatory response, ROS production, and cell apoptosis by acting on the HIF-1, NF-κB, and PI3K-Akt signaling pathways, thereby alleviating sepsis- related ARDS.

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