利用密度泛函理论方法对加巴喷丁的抗惊厥治疗金属复合物进行几何优化和能量参数计算以及分子对接

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY
Amnah Mohammed Alsuhaibani, M. S. Refat, Abdel Majid A. Adam, Mohamed I. Kobeasy, M. Y. El-Sayed, Kareem A. Asla
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引用次数: 0

摘要

这项工作旨在利用 DFT 方法对加巴喷丁(Gpn)的 Mn(II)、Co(II)、Ni(II) 和 Cu(II) 复合物(表述为 [M(Gpn)(H2O)3(Cl)].nH2O 复合物(其中 n = 2-6)进行计算研究。这些络合物之前已经合成并进行了表征。DFT 计算结果与实际研究结果十分吻合。由于络合作用,金属配合物的键长比配体的键长减少或增加。络合物的键角预示着中心金属离子周围的八面体环境,预示着 sp3d2 或 d2sp3 杂化。计算得出的能量参数为负值,表明金属配合物具有稳定性。化合物的能带间隙较小,这预示着其具有较高的生物活性和较强的电子转移倾向。理论和实验红外光谱频率相当可能是由于测量阶段不同造成的。药物(Gpn)及其金属(II)复合物分子相互作用的诱导拟合对接 SP G 分数表明,所有研究化合物对舍托宁受体 5-HT2C 和多巴胺受体 D2 蛋白具有良好的相互作用。Co(II)-Gpn与舍托宁受体5-HT2C的活性位点残基相互作用,对接得分为-7.370 kcal/mol,RMSD = 1.581 Å。另一方面,Ni(II)-Gpn 与 D2 多巴胺受体的最佳对接分数为 -6.638 kcal/mol,RMSD = 1.995 Å。关键词:加巴喷丁、过渡金属、DFT 方法、分子对接 Bull.Chem.Soc.2024, 38(2), 511-526. DOI: https://dx.doi.org/10.4314/bcse.v38i2.18
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Geometry optimization and energy parameter calculations using density-functional theory method and molecular docking of anticonvulsant therapeutic metal complexes of gabapentin
This work aims to give computational studies of Mn(II), Co(II), Ni(II) and Cu(II) complexes of gabapentin (Gpn), formulized as [M(Gpn)(H2O)3(Cl)].nH2O complexes (where n = 2-6), using DFT method. They were previously synthesized and characterized. DFT calculations are in good agreement with practical studies. Bond lengths of metal complexes reduced or increased rather than that of ligand due to complexation. Bond angles of complexes predict the octahedral environment around the central metal ions predicting sp3d2 or d2sp3hybridization. The calculated energy parameters are negative indicating stability of metal complexes. The small energy band gap of compounds predicts the higher biological activity and high tendency of electron transfer. The comparable frequencies of theoretical and experimental IR may be attributed to different phases of measurement. The induced fit docking SP G-score of the molecular interactions of drug (Gpn) and its metal(II) complexes show that all investigated compounds have a good interaction towards sertonine receptor 5-HT2C and D2 dopamine receptor proteins. Co(II)-Gpn interacts with active site residues of sertonine receptor 5-HT2C with an excellent dock score of -7.370 kcal/mol and RMSD = 1.581 Å. On the other hand, Ni(II)-Gpn has the best dock score of -6.638 kcal/mol and RMSD = 1.995 Å with D2 dopamine receptor. KEY WORDS: Gabapentin, Transition metals, DFT-method, molecular docking Bull. Chem. Soc. Ethiop. 2024, 38(2), 511-526.                                                                DOI: https://dx.doi.org/10.4314/bcse.v38i2.18
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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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