{"title":"生活在土壤中的 Tyraphus nitidus Raffray, 1909 (Staphylinidae: Pselaphinae) 的完整线粒体基因组","authors":"Yeon-Jae Choi , Sangil Kim , Jong-Seok Park","doi":"10.1016/j.japb.2024.01.002","DOIUrl":null,"url":null,"abstract":"<div><p>We sequenced the complete mitochondrial genome of the soil-dwelling rove beetle <em>Tyraphus nitidus</em> Raffray, 1909, from Korea. The mitochondrial genome was 16,742 bp in length and consists of 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), and two ribosomal RNA genes (rRNAs). Except <em>cox2</em>, <em>cox3</em>, which use single T residue, and <em>nad4</em>, <em>nad5</em>, which use single A residue, typical PCGs use mitochondrial stop codon (TAR). The nucleotide base composition of the mitogenome is 42.2 % (A), 8.4 % (G), 36.6 % (T), and 12.8 % (C). Our phylogenetic analyses under the maximum likelihood and Bayesian inferences produced a tree congruent in topology, placing the newly sequenced <em>T. nitidus</em> as sister to <em>Diartiger fossulatus</em> Sharp, 1883, within the subfamily Pselaphinae.</p></div>","PeriodicalId":37957,"journal":{"name":"Journal of Asia-Pacific Biodiversity","volume":"17 2","pages":"Pages 365-369"},"PeriodicalIF":0.6000,"publicationDate":"2024-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2287884X24000116/pdfft?md5=f4e31c41e7daa4a8cda2b2419c286e43&pid=1-s2.0-S2287884X24000116-main.pdf","citationCount":"0","resultStr":"{\"title\":\"Complete mitochondrial genome of soil-dwelling Tyraphus nitidus Raffray, 1909 (Staphylinidae: Pselaphinae)\",\"authors\":\"Yeon-Jae Choi , Sangil Kim , Jong-Seok Park\",\"doi\":\"10.1016/j.japb.2024.01.002\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>We sequenced the complete mitochondrial genome of the soil-dwelling rove beetle <em>Tyraphus nitidus</em> Raffray, 1909, from Korea. The mitochondrial genome was 16,742 bp in length and consists of 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), and two ribosomal RNA genes (rRNAs). Except <em>cox2</em>, <em>cox3</em>, which use single T residue, and <em>nad4</em>, <em>nad5</em>, which use single A residue, typical PCGs use mitochondrial stop codon (TAR). The nucleotide base composition of the mitogenome is 42.2 % (A), 8.4 % (G), 36.6 % (T), and 12.8 % (C). Our phylogenetic analyses under the maximum likelihood and Bayesian inferences produced a tree congruent in topology, placing the newly sequenced <em>T. nitidus</em> as sister to <em>Diartiger fossulatus</em> Sharp, 1883, within the subfamily Pselaphinae.</p></div>\",\"PeriodicalId\":37957,\"journal\":{\"name\":\"Journal of Asia-Pacific Biodiversity\",\"volume\":\"17 2\",\"pages\":\"Pages 365-369\"},\"PeriodicalIF\":0.6000,\"publicationDate\":\"2024-01-20\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.sciencedirect.com/science/article/pii/S2287884X24000116/pdfft?md5=f4e31c41e7daa4a8cda2b2419c286e43&pid=1-s2.0-S2287884X24000116-main.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Asia-Pacific Biodiversity\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2287884X24000116\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"BIODIVERSITY CONSERVATION\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Asia-Pacific Biodiversity","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2287884X24000116","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIODIVERSITY CONSERVATION","Score":null,"Total":0}
We sequenced the complete mitochondrial genome of the soil-dwelling rove beetle Tyraphus nitidus Raffray, 1909, from Korea. The mitochondrial genome was 16,742 bp in length and consists of 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), and two ribosomal RNA genes (rRNAs). Except cox2, cox3, which use single T residue, and nad4, nad5, which use single A residue, typical PCGs use mitochondrial stop codon (TAR). The nucleotide base composition of the mitogenome is 42.2 % (A), 8.4 % (G), 36.6 % (T), and 12.8 % (C). Our phylogenetic analyses under the maximum likelihood and Bayesian inferences produced a tree congruent in topology, placing the newly sequenced T. nitidus as sister to Diartiger fossulatus Sharp, 1883, within the subfamily Pselaphinae.
期刊介绍：
The Journal of Asia-Pacific Biodiversity (previous title was Journal of Korean Nature) is an official journal of National Science Museum of Korea (NSMK) and Korea National Arboretum (KNA). The scope of journal is wide and multidisciplinary that publishes original research papers, review articles, as well as conceptual, technical and methodological papers on all aspects of biological diversity-its description, analysis and conservation, and its application by humankind. This wide and multidisciplinary journal aims to provide both scientists and practitioners in conservation theory, policy and management with comprehensive and applicable information. However, papers should not be submitted that deal with microorganisms, except in invited paper. Articles that are focused on the social and economical aspects of biodiversity will be normally not accepted.
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